Variant report

Variant	rs16986502
Chromosome Location	chr22:28933706-28933707
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10483148	1.00[EUR][1000 genomes]
rs10483150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs134485	0.86[EUR][1000 genomes]
rs134493	0.86[EUR][1000 genomes]
rs134498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs134501	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs134502	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs134503	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs134504	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs134505	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs134508	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs134509	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs134510	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs134512	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs134513	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs134515	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs134516	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs134521	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs134528	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16986244	0.95[EUR][1000 genomes]
rs16986248	0.95[EUR][1000 genomes]
rs16986251	1.00[EUR][1000 genomes]
rs16986254	1.00[EUR][1000 genomes]
rs16986257	1.00[EUR][1000 genomes]
rs16986266	1.00[EUR][1000 genomes]
rs16986288	0.84[EUR][1000 genomes]
rs16986311	1.00[EUR][1000 genomes]
rs16986314	1.00[EUR][1000 genomes]
rs16986400	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16986433	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16986438	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16986451	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16986469	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17883639	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17883954	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17886970	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35438111	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5762573	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5762574	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs79104	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs79107	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs79111	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28916600-28935800	Weak transcription	Fetal Lung	lung
2	chr22:28916600-28937200	Weak transcription	HepG2	liver
3	chr22:28917600-28943200	Weak transcription	Left Ventricle	heart
4	chr22:28923400-28940400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr22:28932200-28939000	Weak transcription	Fetal Stomach	stomach
6	chr22:28932600-28939000	Weak transcription	Fetal Intestine Small	intestine
7	chr22:28933600-28953800	Weak transcription	HSMMtube	muscle

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