Variant report

Variant	rs5762574
Chromosome Location	chr22:28767272-28767273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10483148	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483150	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166475	1.00[ASN][1000 genomes]
rs134493	1.00[ASN][1000 genomes]
rs134498	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134501	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134502	0.85[AMR][1000 genomes]
rs134503	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134504	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134505	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134508	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134509	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134510	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134512	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134516	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134521	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134528	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134547	1.00[ASN][1000 genomes]
rs16986244	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986248	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986251	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986254	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986257	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986266	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986288	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16986311	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986314	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986400	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986433	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986438	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986451	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986469	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986502	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35438111	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs5762573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6519751	1.00[ASN][1000 genomes]
rs6519752	1.00[ASN][1000 genomes]
rs7289625	1.00[ASN][1000 genomes]
rs73430118	1.00[ASN][1000 genomes]
rs79104	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs79107	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs79111	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625498	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28752800-28768600	Weak transcription	Left Ventricle	heart
2	chr22:28759800-28777200	Weak transcription	Fetal Stomach	stomach
3	chr22:28760000-28771800	Weak transcription	Right Ventricle	heart
4	chr22:28760200-28768800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr22:28766200-28768600	Weak transcription	Ovary	ovary
6	chr22:28766200-28768800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr22:28766200-28769400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr22:28766200-28772000	Weak transcription	Lung	lung
9	chr22:28766400-28767400	Enhancers	Dnd41	blood
10	chr22:28766400-28768600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr22:28766400-28768800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr22:28766400-28769400	Weak transcription	HSMMtube	muscle
13	chr22:28766400-28769600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr22:28766400-28769600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr22:28766400-28769600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr22:28766400-28769800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr22:28766400-28769800	Weak transcription	Stomach Mucosa	stomach
18	chr22:28766400-28770000	Weak transcription	Fetal Intestine Small	intestine
19	chr22:28766400-28771600	Weak transcription	Psoas Muscle	Psoas
20	chr22:28766600-28769400	Weak transcription	Primary T cells from cord blood	blood
21	chr22:28767000-28769000	Weak transcription	Fetal Heart	heart
22	chr22:28767000-28771600	Weak transcription	Spleen	Spleen
23	chr22:28767200-28771600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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