Variant report

Variant	rs7289625
Chromosome Location	chr22:28896546-28896547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28894867..28896547-chr22:28898720..28901348,2	K562	blood:
2	chr22:28888582..28890420-chr22:28895245..28897649,2	K562	blood:

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs10084639	0.89[EUR][1000 genomes]
rs10222318	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10483148	1.00[ASN][1000 genomes]
rs10483150	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10483151	0.83[CEU][hapmap]
rs12165715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12165893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12165913	0.81[AMR][1000 genomes]
rs12166245	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12166475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12167122	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12167434	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12167532	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12167614	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12168031	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12168765	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12169071	0.90[EUR][1000 genomes]
rs12169120	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12169232	0.87[EUR][1000 genomes]
rs12169262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12169460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12169595	0.82[AFR][1000 genomes]
rs12169880	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1297607	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs134488	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs134493	1.00[ASN][1000 genomes]
rs134498	1.00[ASN][1000 genomes]
rs134501	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs134503	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs134504	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs134505	1.00[ASN][1000 genomes]
rs134506	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs134508	1.00[ASN][1000 genomes]
rs134509	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs134510	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs134512	1.00[ASN][1000 genomes]
rs134513	1.00[ASN][1000 genomes]
rs134514	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs134515	1.00[ASN][1000 genomes]
rs134516	1.00[ASN][1000 genomes]
rs134520	1.00[CHB][hapmap]
rs134521	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs134524	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs134528	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs134547	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474961	0.83[CEU][hapmap]
rs16986244	1.00[ASN][1000 genomes]
rs16986248	1.00[ASN][1000 genomes]
rs16986251	1.00[ASN][1000 genomes]
rs16986254	1.00[ASN][1000 genomes]
rs16986257	1.00[ASN][1000 genomes]
rs16986266	1.00[ASN][1000 genomes]
rs16986288	1.00[ASN][1000 genomes]
rs16986308	0.81[EUR][1000 genomes]
rs16986311	1.00[ASN][1000 genomes]
rs16986314	1.00[ASN][1000 genomes]
rs16986398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16986400	1.00[ASN][1000 genomes]
rs16986433	1.00[ASN][1000 genomes]
rs16986438	1.00[ASN][1000 genomes]
rs16986451	1.00[ASN][1000 genomes]
rs16986469	1.00[ASN][1000 genomes]
rs16986509	0.91[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs17413461	0.83[CEU][hapmap]
rs17507066	0.83[CEU][hapmap]
rs2013784	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2144922	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2881496	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28818228	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35438111	1.00[ASN][1000 genomes]
rs55738739	0.84[AMR][1000 genomes]
rs5752754	0.84[EUR][1000 genomes]
rs5762574	1.00[ASN][1000 genomes]
rs58049055	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58542867	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59262169	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60042154	0.84[AMR][1000 genomes]
rs6005807	0.91[CEU][hapmap];0.96[YRI][hapmap]
rs6005809	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60065194	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60248971	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60693420	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6519751	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6519752	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6519753	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6519758	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7288792	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7289534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7291268	0.91[CEU][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7293232	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73430118	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73430123	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73430155	0.82[AFR][1000 genomes]
rs73430168	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73430179	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73430189	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73432205	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73439811	0.84[AMR][1000 genomes]
rs738200	0.91[CEU][hapmap]
rs738627	0.84[AMR][1000 genomes]
rs79104	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs79107	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs79111	1.00[ASN][1000 genomes]
rs8136767	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8136995	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8137808	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9306457	0.91[CEU][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9608696	1.00[CEU][hapmap]
rs9620797	0.91[CEU][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9620799	0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9620803	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9620804	0.91[CEU][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9620808	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9620810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9620811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625467	0.91[CEU][hapmap]
rs9625475	0.91[CEU][hapmap];0.84[AMR][1000 genomes]
rs9625477	0.91[CEU][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes]
rs9625478	0.83[CEU][hapmap]
rs9625481	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9625484	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9625498	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625509	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9625512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625513	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625514	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625515	0.83[AFR][1000 genomes]
rs9625518	0.94[EUR][1000 genomes]
rs9625520	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625522	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625523	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625524	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625534	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28893000-28901600	Weak transcription	Psoas Muscle	Psoas
2	chr22:28893600-28901400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr22:28894600-28901400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:28894800-28898400	Enhancers	Dnd41	blood
5	chr22:28896000-28896800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr22:28896200-28896800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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