Variant report

Variant	rs134524
Chromosome Location	chr22:28773804-28773805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10212083	0.91[CEU][hapmap]
rs10222318	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10483148	1.00[CHB][hapmap]
rs10483150	1.00[CHB][hapmap]
rs10483151	0.83[CEU][hapmap]
rs12165715	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12165893	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12166245	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12166475	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12167122	0.92[AMR][1000 genomes]
rs12167434	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12167532	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12167614	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12168031	0.85[EUR][1000 genomes]
rs12168765	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12169071	0.83[EUR][1000 genomes]
rs12169120	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12169232	0.81[EUR][1000 genomes]
rs12169460	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12169880	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12170637	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs1297607	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134194	0.91[CEU][hapmap]
rs134197	0.83[CEU][hapmap]
rs134488	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134501	1.00[CHB][hapmap]
rs134503	1.00[CHB][hapmap]
rs134504	1.00[CHB][hapmap]
rs134506	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134509	1.00[CHB][hapmap]
rs134510	1.00[CHB][hapmap]
rs134514	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134520	1.00[CHB][hapmap]
rs134521	1.00[CHB][hapmap]
rs134528	1.00[CHB][hapmap]
rs134547	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1569700	1.00[CHB][hapmap]
rs16986177	1.00[CHB][hapmap]
rs16986254	1.00[CHB][hapmap]
rs16986257	1.00[CHB][hapmap]
rs16986266	1.00[CHB][hapmap]
rs16986308	0.90[EUR][1000 genomes]
rs16986398	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16986509	0.91[CEU][hapmap]
rs17413461	0.83[CEU][hapmap]
rs17487463	0.83[CEU][hapmap]
rs2013784	1.00[CEU][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2144922	1.00[CEU][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2881496	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28818228	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55738739	0.82[AMR][1000 genomes]
rs58049055	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58542867	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60042154	0.82[AMR][1000 genomes]
rs6005807	0.91[CEU][hapmap]
rs6005809	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60065194	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60248971	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60693420	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6519751	0.81[AMR][1000 genomes]
rs6519753	0.82[AMR][1000 genomes]
rs6519758	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7285440	1.00[CHB][hapmap]
rs7288792	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7289534	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7289625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7291268	0.91[CEU][hapmap];0.82[AMR][1000 genomes]
rs7293232	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73430118	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73430168	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73430179	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73430189	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73432205	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73439811	0.82[AMR][1000 genomes]
rs738200	0.91[CEU][hapmap]
rs738627	0.82[AMR][1000 genomes]
rs79104	1.00[CHB][hapmap]
rs79107	1.00[CHB][hapmap]
rs8136767	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8136995	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8137808	0.82[AMR][1000 genomes]
rs9306457	0.91[CEU][hapmap];0.82[AMR][1000 genomes]
rs9620778	0.91[CEU][hapmap]
rs9620779	0.91[CEU][hapmap]
rs9620797	0.91[CEU][hapmap];0.82[AMR][1000 genomes]
rs9620799	0.82[AMR][1000 genomes]
rs9620803	0.82[AMR][1000 genomes]
rs9620804	0.91[CEU][hapmap];0.82[AMR][1000 genomes]
rs9620808	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9620810	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9620811	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9625433	0.83[CEU][hapmap]
rs9625437	0.91[CEU][hapmap]
rs9625438	1.00[CEU][hapmap]
rs9625440	0.83[CEU][hapmap]
rs9625447	0.83[CEU][hapmap]
rs9625467	0.91[CEU][hapmap]
rs9625475	0.91[CEU][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes]
rs9625477	0.91[CEU][hapmap];0.82[AMR][1000 genomes]
rs9625478	0.83[CEU][hapmap]
rs9625481	0.82[AMR][1000 genomes]
rs9625484	0.82[AMR][1000 genomes]
rs9625498	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9625509	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9625512	0.87[EUR][1000 genomes]
rs9625513	0.87[EUR][1000 genomes]
rs9625514	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9625518	0.87[EUR][1000 genomes]
rs9625520	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9625521	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9625522	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9625523	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9625524	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28759800-28777200	Weak transcription	Fetal Stomach	stomach
2	chr22:28770000-28777400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr22:28770200-28774800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr22:28770200-28775000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr22:28770200-28775800	Weak transcription	Fetal Brain Female	brain
6	chr22:28770200-28777200	Weak transcription	Colon Smooth Muscle	Colon
7	chr22:28770400-28775800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr22:28770400-28777000	Weak transcription	NHLF	lung
9	chr22:28770600-28774400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr22:28772000-28775200	Weak transcription	Dnd41	blood
11	chr22:28772000-28777200	Weak transcription	Ovary	ovary
12	chr22:28772200-28774000	Weak transcription	Fetal Intestine Small	intestine
13	chr22:28772200-28774400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr22:28772400-28777000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr22:28772400-28777200	Weak transcription	NHDF-Ad	bronchial
16	chr22:28772800-28774400	Weak transcription	Lung	lung
17	chr22:28772800-28775000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr22:28772800-28775000	Weak transcription	Liver	Liver
19	chr22:28772800-28775200	Weak transcription	Adipose Nuclei	Adipose
20	chr22:28772800-28775400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr22:28772800-28777000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr22:28772800-28777000	Weak transcription	Osteobl	bone
23	chr22:28773000-28774600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr22:28773000-28775800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr22:28773000-28777200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr22:28773200-28777600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr22:28773600-28775400	Weak transcription	Fetal Lung	lung

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