Variant report

Variant	rs9620799
Chromosome Location	chr22:28895412-28895413
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28894867..28896547-chr22:28898720..28901348,2	K562	blood:
2	chr22:28888582..28890420-chr22:28895245..28897649,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10483151	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12165708	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12165715	0.81[AMR][1000 genomes]
rs12166129	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12166363	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12166475	0.84[AMR][1000 genomes]
rs12167532	0.84[AMR][1000 genomes]
rs12167667	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12168708	0.82[EUR][1000 genomes]
rs12169120	0.81[AMR][1000 genomes]
rs12169262	0.96[YRI][hapmap]
rs12169595	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12169966	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1297607	0.83[YRI][hapmap]
rs134514	0.83[YRI][hapmap]
rs134524	0.82[AMR][1000 genomes]
rs134547	0.82[AMR][1000 genomes]
rs1474961	0.92[EUR][1000 genomes]
rs16986398	0.84[AMR][1000 genomes]
rs16986509	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17413461	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55738739	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56391942	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57871917	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs58579082	0.87[AFR][1000 genomes]
rs59262169	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60042154	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6005807	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6519753	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7289625	0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7291268	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73430105	0.89[AFR][1000 genomes]
rs73430118	0.84[AMR][1000 genomes]
rs73430123	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73430136	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73430155	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73430163	0.90[AFR][1000 genomes]
rs73430168	0.87[AFR][1000 genomes]
rs73430186	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73430189	0.81[AMR][1000 genomes]
rs73430202	0.87[AFR][1000 genomes]
rs73437900	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73439811	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs738200	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs738627	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8137200	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8137808	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9306457	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9620797	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9620803	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9620804	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9620809	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625467	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625475	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625477	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625478	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625481	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9625487	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625492	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625501	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9625508	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9625509	0.83[AFR][1000 genomes]
rs9625510	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625515	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9625516	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28893000-28901600	Weak transcription	Psoas Muscle	Psoas
2	chr22:28893600-28901400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr22:28894600-28901400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:28894800-28898400	Enhancers	Dnd41	blood

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