Variant report

Variant	rs57871917
Chromosome Location	chr22:28848205-28848206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28847241..28850416-chr22:28850940..28854599,3	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10483151	0.84[AMR][1000 genomes]
rs12165708	0.81[AMR][1000 genomes]
rs12165715	0.81[AMR][1000 genomes]
rs12166129	0.81[AMR][1000 genomes]
rs12166363	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12167667	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12169120	0.81[AMR][1000 genomes]
rs12169595	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12169966	0.84[AMR][1000 genomes]
rs16986509	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17413461	0.84[AMR][1000 genomes]
rs55738739	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs56391942	0.82[AMR][1000 genomes]
rs59262169	0.91[AMR][1000 genomes]
rs60042154	0.94[AMR][1000 genomes]
rs6005807	0.88[AMR][1000 genomes]
rs6519753	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7291268	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs73428078	0.95[AFR][1000 genomes]
rs73430105	0.80[AFR][1000 genomes]
rs73430123	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73430136	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs73430155	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs73430163	0.82[AFR][1000 genomes]
rs73430186	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs73430189	0.81[AMR][1000 genomes]
rs73437900	0.88[AMR][1000 genomes]
rs73439811	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs738200	0.87[AMR][1000 genomes]
rs738627	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs8137200	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs8137808	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9306457	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9620797	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9620799	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9620803	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9620804	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9620809	0.82[AMR][1000 genomes]
rs9625467	0.87[AMR][1000 genomes]
rs9625475	0.94[AMR][1000 genomes]
rs9625477	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9625478	0.84[AMR][1000 genomes]
rs9625481	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9625484	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9625487	0.84[AMR][1000 genomes]
rs9625492	0.84[AMR][1000 genomes]
rs9625501	0.84[AMR][1000 genomes]
rs9625508	0.84[AMR][1000 genomes]
rs9625510	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9625515	0.82[AMR][1000 genomes]
rs9625516	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28839800-28861200	Weak transcription	Ovary	ovary
2	chr22:28840000-28849600	Weak transcription	Fetal Brain Male	brain
3	chr22:28842600-28849600	Weak transcription	Psoas Muscle	Psoas
4	chr22:28845400-28850000	Weak transcription	Fetal Brain Female	brain
5	chr22:28846200-28850600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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