Variant report

Variant	rs73430105
Chromosome Location	chr22:28888284-28888285
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28886881..28888518-chr22:28890275..28892164,2	K562	blood:
2	chr22:28396428..28399039-chr22:28886798..28889695,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12166363	0.87[AFR][1000 genomes]
rs12167667	0.87[AFR][1000 genomes]
rs12169595	0.90[AFR][1000 genomes]
rs16986509	0.90[AFR][1000 genomes]
rs17882995	1.00[EUR][1000 genomes]
rs57871917	0.80[AFR][1000 genomes]
rs58579082	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58936636	1.00[EUR][1000 genomes]
rs59262169	0.82[AFR][1000 genomes]
rs59773331	1.00[EUR][1000 genomes]
rs59857609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60155737	1.00[EUR][1000 genomes]
rs6519753	0.90[AFR][1000 genomes]
rs7291268	0.90[AFR][1000 genomes]
rs73428078	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73430123	0.90[AFR][1000 genomes]
rs73430136	0.87[AFR][1000 genomes]
rs73430155	0.90[AFR][1000 genomes]
rs73430163	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73430186	0.87[AFR][1000 genomes]
rs73430202	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs738627	0.81[AFR][1000 genomes]
rs73881118	1.00[EUR][1000 genomes]
rs73882711	1.00[EUR][1000 genomes]
rs73882720	1.00[EUR][1000 genomes]
rs73882721	1.00[EUR][1000 genomes]
rs73882748	1.00[EUR][1000 genomes]
rs73882756	1.00[EUR][1000 genomes]
rs73882764	1.00[EUR][1000 genomes]
rs8137200	0.87[AFR][1000 genomes]
rs8139793	1.00[AMR][1000 genomes]
rs9306457	0.90[AFR][1000 genomes]
rs9620797	0.89[AFR][1000 genomes]
rs9620799	0.89[AFR][1000 genomes]
rs9620803	0.90[AFR][1000 genomes]
rs9620804	0.90[AFR][1000 genomes]
rs9625477	0.81[AFR][1000 genomes]
rs9625481	0.87[AFR][1000 genomes]
rs9625484	0.90[AFR][1000 genomes]
rs9625510	0.87[AFR][1000 genomes]
rs9625515	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28881000-28893400	Weak transcription	NHDF-Ad	bronchial
2	chr22:28882000-28890200	Weak transcription	Left Ventricle	heart
3	chr22:28887200-28888400	Weak transcription	Dnd41	blood

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