Variant report

Variant	rs73428078
Chromosome Location	chr22:28844435-28844436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17882995	1.00[EUR][1000 genomes]
rs55738739	0.92[AFR][1000 genomes]
rs57871917	0.95[AFR][1000 genomes]
rs58579082	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58936636	1.00[EUR][1000 genomes]
rs59773331	1.00[EUR][1000 genomes]
rs59857609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60155737	1.00[EUR][1000 genomes]
rs73430105	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73430163	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73430202	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73439811	0.85[AFR][1000 genomes]
rs738627	0.89[AFR][1000 genomes]
rs73881118	1.00[EUR][1000 genomes]
rs73882711	1.00[EUR][1000 genomes]
rs73882720	1.00[EUR][1000 genomes]
rs73882721	1.00[EUR][1000 genomes]
rs73882748	1.00[EUR][1000 genomes]
rs73882756	1.00[EUR][1000 genomes]
rs73882764	1.00[EUR][1000 genomes]
rs8139793	1.00[AMR][1000 genomes]
rs9625477	0.89[AFR][1000 genomes]
rs9625481	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28839600-28844600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr22:28839600-28844600	Weak transcription	K562	blood
3	chr22:28839800-28844600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr22:28839800-28844600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr22:28839800-28861200	Weak transcription	Ovary	ovary
6	chr22:28840000-28844600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr22:28840000-28844600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr22:28840000-28844600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr22:28840000-28844600	Weak transcription	Fetal Kidney	kidney
10	chr22:28840000-28844800	Weak transcription	HUVEC	blood vessel
11	chr22:28840000-28845200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr22:28840000-28847000	Weak transcription	Fetal Lung	lung
13	chr22:28840000-28849600	Weak transcription	Fetal Brain Male	brain
14	chr22:28840400-28844600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr22:28841200-28845800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr22:28842600-28849600	Weak transcription	Psoas Muscle	Psoas
17	chr22:28843400-28844600	Weak transcription	Fetal Intestine Large	intestine
18	chr22:28843600-28844800	Weak transcription	Fetal Intestine Small	intestine
19	chr22:28844200-28845000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr22:28844200-28845200	Weak transcription	Fetal Brain Female	brain
21	chr22:28844200-28846000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr22:28844400-28845000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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