Variant report

Variant	rs9625481
Chromosome Location	chr22:28873048-28873049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10222318	0.81[AFR][1000 genomes]
rs10483151	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12165708	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12165715	0.81[AMR][1000 genomes]
rs12166129	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12166363	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12166475	0.84[AMR][1000 genomes]
rs12167532	0.84[AMR][1000 genomes]
rs12167667	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12168708	0.84[EUR][1000 genomes]
rs12169120	0.81[AMR][1000 genomes]
rs12169595	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12169966	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs134524	0.82[AMR][1000 genomes]
rs134547	0.82[AMR][1000 genomes]
rs1474961	0.91[EUR][1000 genomes]
rs16986398	0.84[AMR][1000 genomes]
rs16986509	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17413461	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55738739	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56391942	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57871917	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs58579082	0.85[AFR][1000 genomes]
rs59262169	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60042154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6005807	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6519753	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7289625	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7291268	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73428078	0.82[AFR][1000 genomes]
rs73430105	0.87[AFR][1000 genomes]
rs73430118	0.84[AMR][1000 genomes]
rs73430123	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73430136	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73430155	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73430163	0.89[AFR][1000 genomes]
rs73430168	0.88[AFR][1000 genomes]
rs73430186	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73430189	0.81[AMR][1000 genomes]
rs73430202	0.85[AFR][1000 genomes]
rs73437900	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73439811	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs738200	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs738627	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8137200	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8137808	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9306457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9620797	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9620799	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9620803	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9620804	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9620809	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9625467	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9625475	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625477	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9625478	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625484	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625487	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625492	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625501	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625508	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625509	0.84[AFR][1000 genomes]
rs9625510	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9625515	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625516	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28861400-28875800	Weak transcription	Fetal Muscle Leg	muscle
2	chr22:28861600-28880200	Weak transcription	Ovary	ovary
3	chr22:28862800-28874800	Weak transcription	Fetal Brain Female	brain
4	chr22:28867800-28873600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr22:28869000-28873600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr22:28870800-28874800	Weak transcription	Dnd41	blood
7	chr22:28871600-28875000	Weak transcription	Fetal Intestine Small	intestine

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