Variant report

Variant	rs73430163
Chromosome Location	chr22:28967284-28967285
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12166363	0.89[AFR][1000 genomes]
rs12167667	0.89[AFR][1000 genomes]
rs12169595	0.92[AFR][1000 genomes]
rs16986509	0.92[AFR][1000 genomes]
rs17882995	1.00[EUR][1000 genomes]
rs57846969	1.00[EUR][1000 genomes]
rs57871917	0.82[AFR][1000 genomes]
rs58579082	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59262169	0.83[AFR][1000 genomes]
rs59773331	1.00[EUR][1000 genomes]
rs59857609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60155737	1.00[EUR][1000 genomes]
rs60780652	1.00[EUR][1000 genomes]
rs61257487	1.00[EUR][1000 genomes]
rs6519753	0.92[AFR][1000 genomes]
rs7291268	0.92[AFR][1000 genomes]
rs73428078	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73430105	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73430123	0.92[AFR][1000 genomes]
rs73430136	0.89[AFR][1000 genomes]
rs73430155	0.92[AFR][1000 genomes]
rs73430168	0.81[AFR][1000 genomes]
rs73430186	0.89[AFR][1000 genomes]
rs73430202	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs738627	0.82[AFR][1000 genomes]
rs73881118	1.00[EUR][1000 genomes]
rs73882748	1.00[EUR][1000 genomes]
rs73882756	1.00[EUR][1000 genomes]
rs73882764	1.00[EUR][1000 genomes]
rs8137200	0.88[AFR][1000 genomes]
rs8139793	1.00[AMR][1000 genomes]
rs9306457	0.92[AFR][1000 genomes]
rs9620797	0.90[AFR][1000 genomes]
rs9620799	0.90[AFR][1000 genomes]
rs9620803	0.92[AFR][1000 genomes]
rs9620804	0.92[AFR][1000 genomes]
rs9625477	0.82[AFR][1000 genomes]
rs9625481	0.89[AFR][1000 genomes]
rs9625484	0.92[AFR][1000 genomes]
rs9625510	0.89[AFR][1000 genomes]
rs9625515	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28956800-28993200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr22:28962400-28971200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr22:28966400-28978800	Weak transcription	Brain Anterior Caudate	brain
4	chr22:28966800-28967800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr22:28967000-28967600	Enhancers	Hela-S3	cervix
6	chr22:28967000-28967800	Enhancers	HepG2	liver
7	chr22:28967200-28967400	Enhancers	NHDF-Ad	bronchial

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