Variant report

Variant	rs59857609
Chromosome Location	chr22:28722891-28722892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11912573	1.00[AMR][1000 genomes]
rs56391942	0.85[AFR][1000 genomes]
rs58936636	1.00[EUR][1000 genomes]
rs59103380	1.00[EUR][1000 genomes]
rs59773331	1.00[EUR][1000 genomes]
rs59846801	1.00[EUR][1000 genomes]
rs60155737	1.00[EUR][1000 genomes]
rs73427710	1.00[AMR][1000 genomes]
rs73427716	1.00[AMR][1000 genomes]
rs73427726	1.00[AMR][1000 genomes]
rs73428078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73430105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73430163	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73880398	1.00[EUR][1000 genomes]
rs73882711	1.00[EUR][1000 genomes]
rs73882720	1.00[EUR][1000 genomes]
rs73882721	1.00[EUR][1000 genomes]
rs73882748	1.00[EUR][1000 genomes]
rs73882756	1.00[EUR][1000 genomes]
rs73882764	1.00[EUR][1000 genomes]
rs8139793	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28712200-28725600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr22:28717200-28726400	Weak transcription	Brain Germinal Matrix	brain
3	chr22:28720200-28724800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr22:28722800-28723800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr22:28722800-28724800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links