Variant report

Variant	rs60155737
Chromosome Location	chr22:28938790-28938791
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs134540	1.00[AMR][1000 genomes]
rs17882995	1.00[EUR][1000 genomes]
rs58579082	1.00[EUR][1000 genomes]
rs59773331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59857609	1.00[EUR][1000 genomes]
rs60780652	1.00[EUR][1000 genomes]
rs61257487	1.00[EUR][1000 genomes]
rs73428078	1.00[EUR][1000 genomes]
rs73430105	1.00[EUR][1000 genomes]
rs73430163	1.00[EUR][1000 genomes]
rs73430202	1.00[EUR][1000 genomes]
rs73881118	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73882720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73882721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73882748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73882756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73882764	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28917600-28943200	Weak transcription	Left Ventricle	heart
2	chr22:28923400-28940400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr22:28932200-28939000	Weak transcription	Fetal Stomach	stomach
4	chr22:28932600-28939000	Weak transcription	Fetal Intestine Small	intestine
5	chr22:28933600-28953800	Weak transcription	HSMMtube	muscle
6	chr22:28934000-28938800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr22:28935400-28940600	Weak transcription	Spleen	Spleen
8	chr22:28935400-28943000	Weak transcription	Fetal Brain Male	brain
9	chr22:28937000-28945600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr22:28937400-28950800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr22:28937600-28938800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr22:28937600-28946200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr22:28937600-28946400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr22:28938000-28939000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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