Variant report

Variant	rs73882720
Chromosome Location	chr22:28666172-28666173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12166253	0.86[AFR][1000 genomes]
rs12167735	0.81[AFR][1000 genomes]
rs12168652	0.81[AFR][1000 genomes]
rs12168708	0.82[AFR][1000 genomes]
rs134194	0.81[AFR][1000 genomes]
rs134540	1.00[AMR][1000 genomes]
rs55846737	0.86[AFR][1000 genomes]
rs58936636	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59103380	1.00[EUR][1000 genomes]
rs59773331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59846801	1.00[EUR][1000 genomes]
rs59857609	1.00[EUR][1000 genomes]
rs60155737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73428078	1.00[EUR][1000 genomes]
rs73430105	1.00[EUR][1000 genomes]
rs73880398	1.00[EUR][1000 genomes]
rs73882711	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73882721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73882748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73882756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73882764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9620779	0.81[AFR][1000 genomes]
rs9625427	0.81[AFR][1000 genomes]
rs9625437	0.81[AFR][1000 genomes]
rs9625441	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28651800-28690600	Weak transcription	Dnd41	blood
2	chr22:28653000-28671600	Weak transcription	Fetal Stomach	stomach
3	chr22:28657000-28691600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr22:28659400-28671200	Weak transcription	Fetal Lung	lung
5	chr22:28662400-28666200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr22:28662800-28666200	Enhancers	Colon Smooth Muscle	Colon
7	chr22:28662800-28671200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr22:28662800-28671200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr22:28663000-28671000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr22:28664400-28666400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr22:28664400-28671800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr22:28664400-28674800	Weak transcription	NHDF-Ad	bronchial
13	chr22:28665000-28666200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr22:28665200-28671000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr22:28665600-28677600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr22:28665800-28666200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr22:28665800-28666400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr22:28666000-28666200	Enhancers	Left Ventricle	heart
19	chr22:28666000-28666200	Enhancers	Right Atrium	heart
20	chr22:28666000-28666200	Enhancers	Small Intestine	intestine

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