Variant report

Variant	rs59262169
Chromosome Location	chr22:28902772-28902773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10483151	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12165708	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12166129	0.91[EUR][1000 genomes]
rs12166363	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12166475	0.81[AMR][1000 genomes]
rs12167532	0.81[AMR][1000 genomes]
rs12167667	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12168708	0.82[EUR][1000 genomes]
rs12169595	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12169966	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1474961	0.92[EUR][1000 genomes]
rs16986398	0.81[AMR][1000 genomes]
rs16986509	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17413461	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55738739	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56391942	0.82[EUR][1000 genomes]
rs57871917	0.91[AMR][1000 genomes]
rs58579082	0.80[AFR][1000 genomes]
rs60042154	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6005807	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6519753	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7289625	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7291268	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73430105	0.82[AFR][1000 genomes]
rs73430118	0.81[AMR][1000 genomes]
rs73430123	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73430136	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73430155	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73430163	0.83[AFR][1000 genomes]
rs73430186	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73430202	0.80[AFR][1000 genomes]
rs73437900	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73439811	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs738200	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs738627	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8137200	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8137808	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9306457	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9620797	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9620799	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9620803	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9620804	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9620809	0.94[EUR][1000 genomes]
rs9625467	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625475	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625477	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625478	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625481	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625484	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9625487	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625492	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625501	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9625508	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9625509	0.84[AFR][1000 genomes]
rs9625510	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625515	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9625516	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28899600-28904000	Weak transcription	Fetal Lung	lung
2	chr22:28901200-28902800	Enhancers	Fetal Muscle Leg	muscle
3	chr22:28901400-28902800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr22:28901600-28902800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr22:28902200-28903800	Enhancers	Fetal Brain Male	brain
6	chr22:28902400-28902800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr22:28902400-28902800	Enhancers	Fetal Muscle Trunk	muscle
8	chr22:28902400-28904000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr22:28902600-28903200	Weak transcription	Right Ventricle	heart
10	chr22:28902600-28910600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links