Variant report

Variant	rs9625487
Chromosome Location	chr22:28916819-28916820
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10483151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12165708	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12166129	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12166363	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12167667	0.92[EUR][1000 genomes]
rs12168708	0.81[EUR][1000 genomes]
rs12169595	0.95[EUR][1000 genomes]
rs12169966	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1474961	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16986509	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17413461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55738739	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56391942	0.81[EUR][1000 genomes]
rs57871917	0.84[AMR][1000 genomes]
rs59262169	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60042154	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6005807	0.91[EUR][1000 genomes]
rs6519753	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7291268	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73430123	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73430136	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73430155	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73430186	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73437900	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73439811	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs738200	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs738627	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8137200	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8137808	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9306457	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9620797	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9620799	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9620803	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9620804	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9620809	0.92[EUR][1000 genomes]
rs9625467	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625475	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9625477	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625481	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625484	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9625501	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625508	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625510	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9625515	0.91[EUR][1000 genomes]
rs9625516	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28908800-28917400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr22:28911000-28917000	Weak transcription	Adipose Nuclei	Adipose
3	chr22:28911000-28917600	Weak transcription	NHDF-Ad	bronchial
4	chr22:28913400-28923800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr22:28916000-28924400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr22:28916200-28917800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr22:28916400-28918000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr22:28916400-28918000	Enhancers	Fetal Muscle Leg	muscle
9	chr22:28916600-28917400	Enhancers	Fetal Muscle Trunk	muscle
10	chr22:28916600-28918000	Enhancers	Ovary	ovary
11	chr22:28916600-28935800	Weak transcription	Fetal Lung	lung
12	chr22:28916600-28937200	Weak transcription	HepG2	liver

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