Variant report

Variant	rs73437900
Chromosome Location	chr22:28757306-28757307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10212083	0.82[EUR][1000 genomes]
rs10483151	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12165708	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166253	0.84[EUR][1000 genomes]
rs12166363	0.88[AMR][1000 genomes]
rs12168708	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12168851	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12169595	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12169966	0.84[EUR][1000 genomes]
rs134194	0.83[EUR][1000 genomes]
rs134197	0.85[EUR][1000 genomes]
rs1474961	0.81[EUR][1000 genomes]
rs16986509	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17413461	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17487463	0.82[EUR][1000 genomes]
rs55738739	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55846737	0.84[EUR][1000 genomes]
rs56391942	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57871917	0.88[AMR][1000 genomes]
rs59262169	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60042154	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6005807	0.82[AMR][1000 genomes]
rs6519753	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7291268	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73430123	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73430136	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73430155	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73430186	0.88[AMR][1000 genomes]
rs73439811	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs738200	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs738627	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8137200	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8137808	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9306457	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9620779	0.81[EUR][1000 genomes]
rs9620797	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9620799	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9620803	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9620804	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9625433	0.81[EUR][1000 genomes]
rs9625437	0.82[EUR][1000 genomes]
rs9625440	0.82[EUR][1000 genomes]
rs9625441	0.83[EUR][1000 genomes]
rs9625447	0.85[EUR][1000 genomes]
rs9625467	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625475	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9625477	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9625478	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9625481	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9625484	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9625487	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9625492	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9625501	0.84[EUR][1000 genomes]
rs9625508	0.81[EUR][1000 genomes]
rs9625510	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28741600-28759000	Weak transcription	Fetal Stomach	stomach
2	chr22:28742800-28759600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr22:28743000-28759000	Weak transcription	Dnd41	blood
4	chr22:28748000-28759600	Weak transcription	Fetal Lung	lung
5	chr22:28752800-28759000	Weak transcription	Ovary	ovary
6	chr22:28752800-28768600	Weak transcription	Left Ventricle	heart
7	chr22:28754000-28759400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr22:28754400-28759200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr22:28754600-28759200	Weak transcription	Adipose Nuclei	Adipose
10	chr22:28754800-28757400	Weak transcription	Fetal Heart	heart
11	chr22:28754800-28766000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr22:28755000-28758000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr22:28755000-28759200	Weak transcription	Psoas Muscle	Psoas
14	chr22:28755800-28757400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr22:28755800-28759200	Weak transcription	Right Ventricle	heart
16	chr22:28755800-28759400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr22:28756600-28759000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr22:28757000-28757800	Enhancers	Duodenum Mucosa	Duodenum

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