Variant report

Variant	rs9625501
Chromosome Location	chr22:28948411-28948412
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28946345..28949286-chr22:28954414..28956604,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10483151	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12165708	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12166129	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12166363	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12167667	0.95[EUR][1000 genomes]
rs12169595	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12169966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1474961	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16986509	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17413461	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55738739	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57871917	0.84[AMR][1000 genomes]
rs59262169	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60042154	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6005807	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6519753	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7291268	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73430123	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73430136	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73430155	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73430186	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73437900	0.84[EUR][1000 genomes]
rs73439811	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs738200	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs738627	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8137200	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8137808	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9306457	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9620797	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9620799	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9620803	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9620804	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9620809	0.95[EUR][1000 genomes]
rs9625467	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625475	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9625477	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625478	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9625481	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9625484	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9625487	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625492	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625510	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9625515	0.94[EUR][1000 genomes]
rs9625516	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	esv3427875	chr22:28948198-28950739	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28933600-28953800	Weak transcription	HSMMtube	muscle
2	chr22:28937400-28950800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr22:28944600-28956000	Weak transcription	NHDF-Ad	bronchial
4	chr22:28944800-28952800	Weak transcription	Fetal Lung	lung

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