Variant report

Variant	rs134197
Chromosome Location	chr22:28663507-28663508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10154425	0.80[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes]
rs10212036	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10212074	1.00[ASN][1000 genomes]
rs10212083	0.91[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483143	0.88[MEX][hapmap]
rs10483151	1.00[CEU][hapmap]
rs12166023	1.00[ASN][1000 genomes]
rs12166158	1.00[ASN][1000 genomes]
rs12166253	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166475	0.83[CEU][hapmap];1.00[MEX][hapmap]
rs12166912	1.00[ASN][1000 genomes]
rs12167735	1.00[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12168054	0.80[CEU][hapmap];1.00[ASN][1000 genomes]
rs12168652	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12168708	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12168851	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12170022	1.00[ASN][1000 genomes]
rs12170637	0.83[CEU][hapmap]
rs1297607	0.83[CEU][hapmap];1.00[MEX][hapmap]
rs134194	0.91[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134488	0.83[CEU][hapmap];1.00[MEX][hapmap]
rs134506	0.83[CEU][hapmap];1.00[MEX][hapmap]
rs134514	0.83[CEU][hapmap];0.88[MEX][hapmap]
rs134524	0.83[CEU][hapmap]
rs134547	0.83[CEU][hapmap];1.00[MEX][hapmap]
rs138642	0.80[AMR][1000 genomes]
rs16985967	0.88[MEX][hapmap]
rs16985976	1.00[ASN][1000 genomes]
rs16986037	1.00[MEX][hapmap];0.87[TSI][hapmap]
rs16986077	1.00[MEX][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes]
rs16986398	0.83[CEU][hapmap];1.00[MEX][hapmap]
rs16987005	1.00[ASN][1000 genomes]
rs17407024	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17413461	1.00[CEU][hapmap]
rs17487463	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2345717	0.84[AMR][1000 genomes]
rs28579300	1.00[ASN][1000 genomes]
rs55846737	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55856549	1.00[ASN][1000 genomes]
rs56233401	1.00[ASN][1000 genomes]
rs56391942	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57686964	1.00[ASN][1000 genomes]
rs58823697	1.00[ASN][1000 genomes]
rs73437900	0.85[EUR][1000 genomes]
rs738200	0.91[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs73880391	1.00[ASN][1000 genomes]
rs73880393	1.00[ASN][1000 genomes]
rs73880395	1.00[ASN][1000 genomes]
rs73882704	1.00[ASN][1000 genomes]
rs73882705	1.00[ASN][1000 genomes]
rs73882709	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs761322	1.00[ASN][1000 genomes]
rs761323	1.00[ASN][1000 genomes]
rs9306452	1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs9620768	0.88[MEX][hapmap];0.87[TSI][hapmap]
rs9620769	1.00[MEX][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes]
rs9620770	1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs9620771	1.00[ASN][1000 genomes]
rs9620778	0.91[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9620779	0.91[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625394	1.00[ASN][1000 genomes]
rs9625405	1.00[ASN][1000 genomes]
rs9625406	1.00[ASN][1000 genomes]
rs9625407	1.00[ASN][1000 genomes]
rs9625408	0.80[CEU][hapmap];1.00[ASN][1000 genomes]
rs9625409	1.00[ASN][1000 genomes]
rs9625410	1.00[ASN][1000 genomes]
rs9625413	1.00[ASN][1000 genomes]
rs9625415	1.00[AFR][1000 genomes]
rs9625418	1.00[ASN][1000 genomes]
rs9625421	1.00[ASN][1000 genomes]
rs9625425	1.00[ASN][1000 genomes]
rs9625430	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9625433	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625437	0.91[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625438	0.83[CEU][hapmap]
rs9625440	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625441	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625447	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9625467	0.91[CEU][hapmap]
rs9625475	0.91[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9625477	0.91[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9625478	1.00[CEU][hapmap]
rs988893	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28646000-28664000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr22:28651800-28690600	Weak transcription	Dnd41	blood
3	chr22:28653000-28664200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr22:28653000-28665000	Weak transcription	Fetal Muscle Leg	muscle
5	chr22:28653000-28671600	Weak transcription	Fetal Stomach	stomach
6	chr22:28656800-28666000	Weak transcription	Small Intestine	intestine
7	chr22:28657000-28664200	Weak transcription	Brain Angular Gyrus	brain
8	chr22:28657000-28691600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr22:28657200-28664000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr22:28659400-28671200	Weak transcription	Fetal Lung	lung
11	chr22:28661400-28664000	Weak transcription	Aorta	Aorta
12	chr22:28662400-28665400	Enhancers	Psoas Muscle	Psoas
13	chr22:28662400-28665800	Enhancers	Adipose Nuclei	Adipose
14	chr22:28662400-28666200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr22:28662600-28665400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr22:28662800-28663800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr22:28662800-28664200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr22:28662800-28666200	Enhancers	Colon Smooth Muscle	Colon
19	chr22:28662800-28671200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr22:28662800-28671200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr22:28663000-28665400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr22:28663000-28671000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr22:28663200-28663600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr22:28663400-28664400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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