Variant report

Variant	rs9625425
Chromosome Location	chr22:28583679-28583680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10154425	0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212007	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10212036	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212040	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10212074	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10212083	0.82[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10483142	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10483143	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12166023	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166077	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs12166158	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166253	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12166256	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12166719	0.89[CEU][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12166740	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12166912	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166938	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12167735	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12168054	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12168180	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12168251	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12168652	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12168708	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12168851	0.81[AMR][1000 genomes]
rs12169888	0.82[EUR][1000 genomes]
rs12170022	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12170558	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12170953	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs134194	0.81[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs134197	1.00[ASN][1000 genomes]
rs138642	0.83[AMR][1000 genomes]
rs138651	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs138653	0.89[CEU][hapmap]
rs138654	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs138655	0.82[EUR][1000 genomes]
rs138656	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs138658	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs138660	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs138664	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs138665	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs138667	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs138671	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs138672	0.82[EUR][1000 genomes]
rs16985967	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16985976	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986037	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16986077	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16987005	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17407024	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17483887	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs17484337	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2745562	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs28375646	0.82[EUR][1000 genomes]
rs28579300	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4036493	0.80[EUR][1000 genomes]
rs470102	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs470103	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs470104	0.82[EUR][1000 genomes]
rs55846737	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs55856549	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56233401	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56393679	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57686964	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58050941	0.80[EUR][1000 genomes]
rs58823697	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58936636	0.84[AFR][1000 genomes]
rs7286519	0.82[EUR][1000 genomes]
rs73880374	0.82[EUR][1000 genomes]
rs73880375	0.82[EUR][1000 genomes]
rs73880376	0.82[EUR][1000 genomes]
rs73880381	0.82[EUR][1000 genomes]
rs73880383	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73880384	0.82[EUR][1000 genomes]
rs73880385	0.84[EUR][1000 genomes]
rs73880387	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73880391	1.00[ASN][1000 genomes]
rs73880393	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880395	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73882704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73882705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73882709	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73882711	0.84[AFR][1000 genomes]
rs761322	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761323	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9306451	0.84[EUR][1000 genomes]
rs9306452	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620762	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs9620764	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs9620766	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9620767	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9620768	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9620769	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620770	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620771	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620778	0.81[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9620779	0.82[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9625387	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs9625388	0.82[EUR][1000 genomes]
rs9625390	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs9625391	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs9625393	0.82[EUR][1000 genomes]
rs9625394	1.00[ASN][1000 genomes]
rs9625395	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9625396	0.84[EUR][1000 genomes]
rs9625397	0.84[EUR][1000 genomes]
rs9625398	0.84[EUR][1000 genomes]
rs9625399	0.84[EUR][1000 genomes]
rs9625400	0.84[EUR][1000 genomes]
rs9625402	0.84[EUR][1000 genomes]
rs9625403	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9625405	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625406	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625407	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625408	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625409	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625410	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625413	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625415	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9625416	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9625417	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9625418	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625421	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625427	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625430	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9625433	1.00[ASN][1000 genomes]
rs9625437	0.82[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9625441	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9712839	0.86[EUR][1000 genomes]
rs988893	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28572200-28597800	Weak transcription	Dnd41	blood
2	chr22:28577000-28603600	Weak transcription	Aorta	Aorta
3	chr22:28577400-28584600	Weak transcription	Fetal Brain Female	brain
4	chr22:28577800-28600400	Weak transcription	Right Atrium	heart
5	chr22:28578400-28583800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr22:28579600-28584600	Weak transcription	Psoas Muscle	Psoas
7	chr22:28579600-28587400	Weak transcription	Lung	lung
8	chr22:28580400-28583800	Weak transcription	Brain Germinal Matrix	brain
9	chr22:28582800-28585000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr22:28582800-28585000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr22:28583000-28585000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr22:28583200-28584200	Enhancers	Fetal Brain Male	brain
13	chr22:28583200-28584600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr22:28583200-28585000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr22:28583400-28584000	Enhancers	Fetal Heart	heart
16	chr22:28583400-28584600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr22:28583400-28584600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr22:28583400-28585000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr22:28583400-28585000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr22:28583400-28585400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr22:28583600-28583800	Enhancers	Fetal Lung	lung
22	chr22:28583600-28584000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr22:28583600-28584600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr22:28583600-28584800	Enhancers	Fetal Muscle Leg	muscle
25	chr22:28583600-28585200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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