Variant report

Variant	rs58050941
Chromosome Location	chr22:28438585-28438586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs10154425	0.89[EUR][1000 genomes]
rs10212036	0.80[EUR][1000 genomes]
rs10483140	0.86[EUR][1000 genomes]
rs10483142	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483143	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs118840	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12165651	0.88[EUR][1000 genomes]
rs12165797	0.88[EUR][1000 genomes]
rs12166023	0.88[EUR][1000 genomes]
rs12166077	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166158	0.89[EUR][1000 genomes]
rs12166164	0.81[EUR][1000 genomes]
rs12166256	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166389	0.88[EUR][1000 genomes]
rs12166719	1.00[ASN][1000 genomes]
rs12166740	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166912	0.89[EUR][1000 genomes]
rs12166938	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12167320	0.88[EUR][1000 genomes]
rs12167829	0.88[EUR][1000 genomes]
rs12168054	0.91[EUR][1000 genomes]
rs12168180	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12168251	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12168582	0.86[EUR][1000 genomes]
rs12169097	0.88[EUR][1000 genomes]
rs12169888	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12169936	0.88[EUR][1000 genomes]
rs12170022	0.89[EUR][1000 genomes]
rs12170558	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12170953	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12171104	0.86[EUR][1000 genomes]
rs138636	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138637	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138639	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138640	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138642	0.89[EUR][1000 genomes]
rs138651	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138653	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138654	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138655	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138656	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs138658	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138660	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138664	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138665	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138667	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138669	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138670	0.89[EUR][1000 genomes]
rs138671	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138672	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16985763	0.88[EUR][1000 genomes]
rs16985967	1.00[ASN][1000 genomes]
rs16986037	0.89[EUR][1000 genomes]
rs16986077	0.81[EUR][1000 genomes]
rs16987005	0.89[EUR][1000 genomes]
rs17390800	0.88[EUR][1000 genomes]
rs17407024	0.85[EUR][1000 genomes]
rs17483887	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17484337	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2745562	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28375646	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28579300	0.80[EUR][1000 genomes]
rs4036493	0.84[AFR][1000 genomes]
rs470098	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs470102	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs470103	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs470104	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55856549	0.84[EUR][1000 genomes]
rs56233401	0.89[EUR][1000 genomes]
rs56393679	1.00[ASN][1000 genomes]
rs57686964	0.89[EUR][1000 genomes]
rs58823697	0.89[EUR][1000 genomes]
rs7286519	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7288331	0.88[EUR][1000 genomes]
rs7289984	0.88[EUR][1000 genomes]
rs7292562	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880355	0.86[EUR][1000 genomes]
rs73880374	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880375	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880376	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880381	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880382	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880383	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880384	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880385	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880387	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880393	0.87[EUR][1000 genomes]
rs73882704	0.80[EUR][1000 genomes]
rs73882705	0.80[EUR][1000 genomes]
rs761322	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs761323	0.89[EUR][1000 genomes]
rs8141163	0.88[EUR][1000 genomes]
rs8141173	0.88[EUR][1000 genomes]
rs9306451	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620752	0.88[EUR][1000 genomes]
rs9620753	0.88[EUR][1000 genomes]
rs9620755	0.85[EUR][1000 genomes]
rs9620757	0.88[EUR][1000 genomes]
rs9620762	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620764	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620766	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620767	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620768	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620769	0.87[EUR][1000 genomes]
rs9620771	0.87[EUR][1000 genomes]
rs9625361	0.86[EUR][1000 genomes]
rs9625363	0.88[EUR][1000 genomes]
rs9625366	0.86[EUR][1000 genomes]
rs9625367	0.88[EUR][1000 genomes]
rs9625370	0.88[EUR][1000 genomes]
rs9625374	0.88[EUR][1000 genomes]
rs9625375	0.88[EUR][1000 genomes]
rs9625377	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625387	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625388	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625390	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625391	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625393	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625395	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625396	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625397	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625398	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625399	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625400	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625402	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625403	1.00[ASN][1000 genomes]
rs9625406	0.90[EUR][1000 genomes]
rs9625407	0.89[EUR][1000 genomes]
rs9625408	0.89[EUR][1000 genomes]
rs9625409	0.87[EUR][1000 genomes]
rs9625410	0.86[EUR][1000 genomes]
rs9625413	0.89[EUR][1000 genomes]
rs9625415	0.94[EUR][1000 genomes]
rs9625416	0.89[EUR][1000 genomes]
rs9625417	0.89[EUR][1000 genomes]
rs9625418	0.87[EUR][1000 genomes]
rs9625421	0.84[EUR][1000 genomes]
rs9625425	0.80[EUR][1000 genomes]
rs9625427	0.82[EUR][1000 genomes]
rs9625430	0.84[EUR][1000 genomes]
rs9712839	1.00[ASN][1000 genomes]
rs988893	0.80[EUR][1000 genomes]
rs9985213	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28427400-28442200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr22:28429600-28442200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr22:28431200-28449600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr22:28431200-28459600	Weak transcription	Aorta	Aorta
5	chr22:28431600-28439400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr22:28431600-28442600	Weak transcription	Adipose Nuclei	Adipose
7	chr22:28431600-28442800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr22:28431600-28443000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr22:28431600-28443200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr22:28431600-28447600	Weak transcription	Fetal Brain Female	brain
11	chr22:28431800-28444200	Weak transcription	Thymus	Thymus
12	chr22:28432000-28447600	Weak transcription	Fetal Brain Male	brain
13	chr22:28432000-28469000	Weak transcription	Primary T cells from cord blood	blood
14	chr22:28432200-28441800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr22:28432200-28442200	Weak transcription	Dnd41	blood
16	chr22:28432200-28443000	Weak transcription	Fetal Intestine Small	intestine
17	chr22:28438400-28438600	Enhancers	Colon Smooth Muscle	Colon

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