Variant report

Variant	rs9625400
Chromosome Location	chr22:28478439-28478440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs10154425	0.86[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10212007	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10212036	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10212040	0.84[AMR][1000 genomes]
rs10483142	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483143	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs118840	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12165651	0.81[EUR][1000 genomes]
rs12165797	0.81[EUR][1000 genomes]
rs12166023	0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12166077	0.86[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166158	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12166164	0.84[EUR][1000 genomes]
rs12166256	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166389	0.81[EUR][1000 genomes]
rs12166719	0.86[CEU][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166740	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166912	0.80[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12166938	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12167320	0.81[EUR][1000 genomes]
rs12167829	0.81[EUR][1000 genomes]
rs12168054	0.86[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12168180	0.80[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12168251	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12169097	0.81[EUR][1000 genomes]
rs12169888	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12169936	0.81[EUR][1000 genomes]
rs12170022	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12170558	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12170953	0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138636	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138637	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138639	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138640	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138642	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs138651	0.85[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138653	0.86[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138654	0.86[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138655	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138656	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs138658	0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138660	0.86[CEU][hapmap];0.80[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138664	0.86[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138665	0.86[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138667	0.86[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138669	1.00[ASN][1000 genomes]
rs138670	0.82[EUR][1000 genomes]
rs138671	0.86[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138672	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16985763	0.81[EUR][1000 genomes]
rs16985967	0.86[CEU][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16985976	0.86[CEU][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16986037	0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16986077	0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16987005	0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17390800	0.81[EUR][1000 genomes]
rs17407024	0.85[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17483887	0.86[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17484337	0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143420	0.89[YRI][hapmap]
rs2745562	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28375646	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28579300	0.84[EUR][1000 genomes]
rs4036493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs470098	0.80[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs470102	0.86[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs470103	0.86[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs470104	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55856549	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56233401	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56393679	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57686964	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58050941	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58823697	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7286519	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7288331	0.81[EUR][1000 genomes]
rs7289984	0.81[EUR][1000 genomes]
rs7292562	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880374	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880375	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880376	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880381	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880382	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880383	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880384	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880385	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880387	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880393	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73880395	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73882704	0.84[EUR][1000 genomes]
rs73882705	0.84[EUR][1000 genomes]
rs761322	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs761323	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8141163	0.81[EUR][1000 genomes]
rs8141173	0.81[EUR][1000 genomes]
rs9306451	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9306452	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9620752	0.81[EUR][1000 genomes]
rs9620753	0.81[EUR][1000 genomes]
rs9620757	0.81[EUR][1000 genomes]
rs9620762	0.86[CEU][hapmap];0.80[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620764	0.86[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620766	0.86[CEU][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620767	0.86[CEU][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620768	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620769	0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9620770	0.86[CEU][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9620771	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625363	0.81[EUR][1000 genomes]
rs9625367	0.81[EUR][1000 genomes]
rs9625370	0.81[EUR][1000 genomes]
rs9625374	0.81[EUR][1000 genomes]
rs9625375	0.81[EUR][1000 genomes]
rs9625377	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625387	0.86[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625388	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625390	0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625391	0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625393	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625395	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625396	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625399	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625403	0.86[CEU][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625405	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9625406	0.83[EUR][1000 genomes]
rs9625407	0.81[EUR][1000 genomes]
rs9625408	0.86[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9625409	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625410	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9625413	0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9625415	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9625416	0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9625417	0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9625418	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625421	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9625425	0.84[EUR][1000 genomes]
rs9625427	0.82[EUR][1000 genomes]
rs9625430	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9712839	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988893	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9985213	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28449600-28479200	Weak transcription	Brain Germinal Matrix	brain
2	chr22:28449600-28488200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr22:28466400-28489800	Weak transcription	Fetal Brain Male	brain
4	chr22:28466600-28503600	Weak transcription	Hela-S3	cervix
5	chr22:28468600-28489800	Weak transcription	Fetal Kidney	kidney
6	chr22:28468800-28480000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr22:28469000-28480000	Weak transcription	Fetal Brain Female	brain
8	chr22:28470000-28486800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr22:28471600-28487400	Weak transcription	Brain Hippocampus Middle	brain
10	chr22:28471600-28491800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr22:28471800-28479600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr22:28471800-28486600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr22:28471800-28486800	Weak transcription	Adipose Nuclei	Adipose
14	chr22:28471800-28488400	Weak transcription	Left Ventricle	heart
15	chr22:28471800-28491400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr22:28471800-28492000	Weak transcription	Aorta	Aorta
17	chr22:28472000-28479200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr22:28472000-28479600	Weak transcription	Fetal Stomach	stomach
19	chr22:28472000-28480000	Weak transcription	Fetal Muscle Leg	muscle
20	chr22:28472000-28480000	Weak transcription	Ovary	ovary
21	chr22:28472000-28487400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr22:28472000-28489600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr22:28472000-28489800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr22:28472000-28494800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr22:28472000-28499000	Weak transcription	NHDF-Ad	bronchial
26	chr22:28472200-28480000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr22:28472200-28498600	Weak transcription	Colon Smooth Muscle	Colon
28	chr22:28472400-28479600	Weak transcription	Fetal Intestine Small	intestine
29	chr22:28472400-28494200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr22:28472800-28495400	Weak transcription	Pancreas	Pancrea
31	chr22:28472800-28501000	Weak transcription	Gastric	stomach
32	chr22:28474000-28488600	Weak transcription	Fetal Lung	lung
33	chr22:28475200-28489800	Weak transcription	Fetal Heart	heart
34	chr22:28475400-28487400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr22:28476400-28479200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr22:28477000-28479000	Weak transcription	Dnd41	blood
37	chr22:28477600-28480000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
38	chr22:28478000-28478800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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