Variant report

Variant	rs73880384
Chromosome Location	chr22:28464952-28464953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28461994..28463854-chr22:28464020..28466662,2	MCF-7	breast:
2	chr22:28464126..28466768-chr22:28468143..28470001,2	K562	blood:

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10154425	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10212007	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10212036	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10483140	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10483142	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483143	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs118840	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12165651	0.82[EUR][1000 genomes]
rs12165797	0.82[EUR][1000 genomes]
rs12166023	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12166077	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166158	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12166164	0.82[EUR][1000 genomes]
rs12166256	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166389	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12166719	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166740	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166912	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12166938	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12167320	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12167829	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12168054	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12168180	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12168251	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12168582	0.81[EUR][1000 genomes]
rs12169097	0.82[EUR][1000 genomes]
rs12169888	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12169936	0.82[EUR][1000 genomes]
rs12170022	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12170558	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12170953	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12171104	0.81[EUR][1000 genomes]
rs138636	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138637	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138639	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138640	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138642	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs138651	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138653	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138654	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138655	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138656	0.89[EUR][1000 genomes]
rs138658	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138660	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138664	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138665	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138667	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138669	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138670	0.84[EUR][1000 genomes]
rs138671	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138672	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16985763	0.82[EUR][1000 genomes]
rs16985967	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16985976	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16986037	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16986077	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16987005	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17390800	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17407024	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17483887	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17484337	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2745562	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28375646	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28579300	0.82[EUR][1000 genomes]
rs4036493	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs470098	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs470102	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs470103	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs470104	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55856549	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56233401	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56393679	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57686964	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58050941	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58823697	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7286519	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7288331	0.82[EUR][1000 genomes]
rs7289984	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7292562	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880355	0.81[EUR][1000 genomes]
rs73880374	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880375	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880376	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880381	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880382	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880383	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880385	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880387	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880393	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73880395	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73882704	0.82[EUR][1000 genomes]
rs73882705	0.82[EUR][1000 genomes]
rs761322	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs761323	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8141163	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8141173	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9306451	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9306452	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9620752	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9620753	0.82[EUR][1000 genomes]
rs9620757	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9620762	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620764	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620766	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620767	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620768	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620769	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9620770	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9620771	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9625361	0.81[EUR][1000 genomes]
rs9625363	0.82[EUR][1000 genomes]
rs9625366	0.81[EUR][1000 genomes]
rs9625367	0.82[EUR][1000 genomes]
rs9625370	0.82[EUR][1000 genomes]
rs9625374	0.82[EUR][1000 genomes]
rs9625375	0.82[EUR][1000 genomes]
rs9625377	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625387	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625388	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625390	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625391	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625393	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625395	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625396	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625397	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625398	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625399	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625400	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625402	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625403	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625405	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9625406	0.81[EUR][1000 genomes]
rs9625408	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625409	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9625410	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9625413	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625415	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9625416	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625417	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625418	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9625421	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9625425	0.82[EUR][1000 genomes]
rs9625427	0.84[EUR][1000 genomes]
rs9625430	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9712839	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988893	0.82[EUR][1000 genomes]
rs9985213	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28432000-28469000	Weak transcription	Primary T cells from cord blood	blood
2	chr22:28445200-28470400	Weak transcription	Pancreas	Pancrea
3	chr22:28445400-28470800	Weak transcription	Lung	lung
4	chr22:28446200-28467800	Weak transcription	Fetal Muscle Leg	muscle
5	chr22:28449600-28479200	Weak transcription	Brain Germinal Matrix	brain
6	chr22:28449600-28488200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr22:28450000-28471400	Weak transcription	Colon Smooth Muscle	Colon
8	chr22:28450400-28468200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr22:28450600-28468000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr22:28450600-28468200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr22:28456800-28471400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr22:28457000-28468000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr22:28457400-28471400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr22:28457600-28468600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr22:28458400-28471200	Weak transcription	Small Intestine	intestine
16	chr22:28459400-28471200	Weak transcription	Brain Anterior Caudate	brain
17	chr22:28459600-28471400	Weak transcription	HepG2	liver
18	chr22:28459800-28466800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr22:28459800-28468200	Weak transcription	Gastric	stomach
20	chr22:28460000-28465000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr22:28460000-28465600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr22:28460000-28466800	Weak transcription	Fetal Stomach	stomach
23	chr22:28460000-28467800	Weak transcription	Fetal Lung	lung
24	chr22:28460000-28468000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr22:28460000-28471200	Weak transcription	Aorta	Aorta
26	chr22:28460200-28465200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr22:28460200-28465200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr22:28461600-28465000	Weak transcription	Osteobl	bone
29	chr22:28461600-28466800	Weak transcription	Fetal Brain Female	brain
30	chr22:28461600-28467800	Weak transcription	Fetal Kidney	kidney
31	chr22:28461600-28470800	Weak transcription	Right Ventricle	heart
32	chr22:28461600-28471200	Weak transcription	Ovary	ovary
33	chr22:28461800-28468400	Weak transcription	Fetal Intestine Small	intestine
34	chr22:28462000-28467800	Weak transcription	Fetal Intestine Large	intestine
35	chr22:28462000-28471200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr22:28462600-28469400	Weak transcription	Fetal Heart	heart
37	chr22:28463000-28465000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr22:28463000-28468000	Weak transcription	Adipose Nuclei	Adipose
39	chr22:28463000-28470400	Weak transcription	Left Ventricle	heart
40	chr22:28463000-28471400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr22:28464200-28466200	Weak transcription	Dnd41	blood
42	chr22:28464200-28467000	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr22:28464800-28465400	Enhancers	HSMMtube	muscle
44	chr22:28464800-28466000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links