Variant report

Variant	rs10212007
Chromosome Location	chr22:28560148-28560149
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28550689..28552785-chr22:28558591..28560583,2	K562	blood:

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10154425	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10212036	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10212040	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10212074	0.90[AMR][1000 genomes]
rs10483142	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10483143	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12166023	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12166077	0.84[EUR][1000 genomes]
rs12166158	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12166164	0.81[EUR][1000 genomes]
rs12166256	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12166719	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12166740	0.86[EUR][1000 genomes]
rs12166912	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12166938	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12167735	0.86[EUR][1000 genomes]
rs12168054	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12168180	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12168251	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12168652	0.88[EUR][1000 genomes]
rs12169888	0.84[EUR][1000 genomes]
rs12170022	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12170558	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12170953	0.84[EUR][1000 genomes]
rs138642	0.86[AMR][1000 genomes]
rs138651	0.84[EUR][1000 genomes]
rs138654	0.84[EUR][1000 genomes]
rs138655	0.84[EUR][1000 genomes]
rs138656	0.84[EUR][1000 genomes]
rs138658	0.84[EUR][1000 genomes]
rs138660	0.84[EUR][1000 genomes]
rs138664	0.84[EUR][1000 genomes]
rs138665	0.84[EUR][1000 genomes]
rs138667	0.84[EUR][1000 genomes]
rs138671	0.84[EUR][1000 genomes]
rs138672	0.84[EUR][1000 genomes]
rs16985967	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16985976	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16986037	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16986077	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16987005	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17407024	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17483887	0.84[EUR][1000 genomes]
rs17484337	0.84[EUR][1000 genomes]
rs2745562	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28375646	0.84[EUR][1000 genomes]
rs28579300	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4036493	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs470102	0.84[EUR][1000 genomes]
rs470103	0.84[EUR][1000 genomes]
rs470104	0.84[EUR][1000 genomes]
rs55856549	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56233401	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56393679	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57686964	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58823697	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62237575	0.95[ASN][1000 genomes]
rs713649	0.84[ASN][1000 genomes]
rs7286519	0.84[EUR][1000 genomes]
rs73880374	0.84[EUR][1000 genomes]
rs73880375	0.84[EUR][1000 genomes]
rs73880376	0.84[EUR][1000 genomes]
rs73880381	0.84[EUR][1000 genomes]
rs73880382	0.81[EUR][1000 genomes]
rs73880383	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73880384	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73880385	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73880387	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73880393	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73880395	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73882704	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73882705	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73882709	0.88[EUR][1000 genomes]
rs761322	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs761323	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9306451	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9306452	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9620762	0.84[EUR][1000 genomes]
rs9620764	0.84[EUR][1000 genomes]
rs9620766	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9620767	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9620768	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9620769	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9620770	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9620771	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625387	0.84[EUR][1000 genomes]
rs9625388	0.84[EUR][1000 genomes]
rs9625390	0.84[EUR][1000 genomes]
rs9625391	0.83[EUR][1000 genomes]
rs9625393	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9625395	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9625396	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9625397	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9625398	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9625399	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9625400	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9625402	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9625403	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9625405	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9625406	0.80[EUR][1000 genomes]
rs9625407	0.82[EUR][1000 genomes]
rs9625408	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9625409	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625410	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9625413	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9625415	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9625416	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9625417	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9625418	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625421	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9625425	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9625427	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9625430	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9712839	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs988893	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28540200-28567800	Weak transcription	Gastric	stomach
2	chr22:28540800-28567800	Weak transcription	Small Intestine	intestine
3	chr22:28543400-28568800	Weak transcription	NHDF-Ad	bronchial
4	chr22:28543800-28567200	Weak transcription	Fetal Heart	heart
5	chr22:28548400-28566600	Weak transcription	Colon Smooth Muscle	Colon
6	chr22:28551200-28561000	Weak transcription	Osteobl	bone
7	chr22:28555000-28561800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr22:28556800-28567000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr22:28557200-28560600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr22:28557600-28567800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr22:28558000-28560400	Weak transcription	Primary T cells from cord blood	blood
12	chr22:28558000-28560400	Weak transcription	HSMMtube	muscle
13	chr22:28559000-28560200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr22:28559200-28560200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr22:28559200-28560600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr22:28559400-28561200	Weak transcription	Liver	Liver
17	chr22:28559400-28561200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr22:28559600-28561600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr22:28559600-28562600	Weak transcription	Pancreas	Pancrea
20	chr22:28559600-28563000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr22:28559600-28566800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr22:28559600-28566800	Weak transcription	Fetal Lung	lung
23	chr22:28559600-28566800	Weak transcription	Left Ventricle	heart
24	chr22:28559600-28567000	Weak transcription	Fetal Brain Male	brain
25	chr22:28559600-28567200	Weak transcription	Adipose Nuclei	Adipose
26	chr22:28559600-28567600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr22:28559600-28567800	Weak transcription	Ovary	ovary
28	chr22:28559800-28560200	Weak transcription	Fetal Brain Female	brain
29	chr22:28559800-28563000	Weak transcription	Fetal Kidney	kidney
30	chr22:28559800-28566800	Weak transcription	Dnd41	blood
31	chr22:28559800-28577400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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