Variant report

Variant	rs62237575
Chromosome Location	chr22:28559994-28559995
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28550689..28552785-chr22:28558591..28560583,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10212007	0.95[ASN][1000 genomes]
rs695289	0.83[ASN][1000 genomes]
rs695305	0.83[ASN][1000 genomes]
rs695344	0.83[ASN][1000 genomes]
rs695555	0.83[ASN][1000 genomes]
rs695580	0.83[ASN][1000 genomes]
rs695609	0.83[ASN][1000 genomes]
rs695626	0.83[ASN][1000 genomes]
rs695627	0.83[ASN][1000 genomes]
rs713649	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28540200-28567800	Weak transcription	Gastric	stomach
2	chr22:28540800-28567800	Weak transcription	Small Intestine	intestine
3	chr22:28543400-28568800	Weak transcription	NHDF-Ad	bronchial
4	chr22:28543800-28567200	Weak transcription	Fetal Heart	heart
5	chr22:28548400-28566600	Weak transcription	Colon Smooth Muscle	Colon
6	chr22:28551200-28561000	Weak transcription	Osteobl	bone
7	chr22:28555000-28561800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr22:28556800-28567000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr22:28557200-28560600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr22:28557600-28567800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr22:28558000-28560400	Weak transcription	Primary T cells from cord blood	blood
12	chr22:28558000-28560400	Weak transcription	HSMMtube	muscle
13	chr22:28559000-28560200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr22:28559200-28560200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr22:28559200-28560600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr22:28559400-28561200	Weak transcription	Liver	Liver
17	chr22:28559400-28561200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr22:28559600-28561600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr22:28559600-28562600	Weak transcription	Pancreas	Pancrea
20	chr22:28559600-28563000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr22:28559600-28566800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr22:28559600-28566800	Weak transcription	Fetal Lung	lung
23	chr22:28559600-28566800	Weak transcription	Left Ventricle	heart
24	chr22:28559600-28567000	Weak transcription	Fetal Brain Male	brain
25	chr22:28559600-28567200	Weak transcription	Adipose Nuclei	Adipose
26	chr22:28559600-28567600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr22:28559600-28567800	Weak transcription	Ovary	ovary
28	chr22:28559800-28560200	Weak transcription	Fetal Brain Female	brain
29	chr22:28559800-28563000	Weak transcription	Fetal Kidney	kidney
30	chr22:28559800-28566800	Weak transcription	Dnd41	blood
31	chr22:28559800-28577400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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