Variant report

Variant	rs73882709
Chromosome Location	chr22:28603480-28603481
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10154425	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212007	0.88[EUR][1000 genomes]
rs10212036	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212074	1.00[ASN][1000 genomes]
rs10212083	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12166023	1.00[ASN][1000 genomes]
rs12166158	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166253	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12166256	0.81[EUR][1000 genomes]
rs12166912	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12167735	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12168054	1.00[ASN][1000 genomes]
rs12168180	0.82[EUR][1000 genomes]
rs12168652	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12168708	0.87[AMR][1000 genomes]
rs12168851	0.87[AMR][1000 genomes]
rs12170022	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs134194	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs134197	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16985976	1.00[ASN][1000 genomes]
rs16986037	0.81[EUR][1000 genomes]
rs16986077	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16987005	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17407024	1.00[ASN][1000 genomes]
rs17487463	0.84[AMR][1000 genomes]
rs28579300	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55846737	0.87[AMR][1000 genomes]
rs55856549	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56233401	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56391942	0.82[AMR][1000 genomes]
rs57686964	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58823697	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880391	1.00[ASN][1000 genomes]
rs73880393	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73880395	1.00[ASN][1000 genomes]
rs73882704	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73882705	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761322	1.00[ASN][1000 genomes]
rs761323	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9306452	1.00[ASN][1000 genomes]
rs9620768	0.82[EUR][1000 genomes]
rs9620769	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620770	1.00[ASN][1000 genomes]
rs9620771	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620778	0.84[AMR][1000 genomes]
rs9620779	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9625394	1.00[ASN][1000 genomes]
rs9625395	0.81[EUR][1000 genomes]
rs9625405	1.00[ASN][1000 genomes]
rs9625406	1.00[ASN][1000 genomes]
rs9625407	1.00[ASN][1000 genomes]
rs9625408	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625409	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625410	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625413	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625416	0.81[EUR][1000 genomes]
rs9625417	0.81[EUR][1000 genomes]
rs9625418	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625421	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625425	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625427	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625430	0.89[EUR][1000 genomes]
rs9625433	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9625437	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9625440	0.84[AMR][1000 genomes]
rs9625441	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9625447	0.84[AMR][1000 genomes]
rs988893	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv962867	chr22:28595811-28611386	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28577000-28603600	Weak transcription	Aorta	Aorta
2	chr22:28600200-28616400	Weak transcription	Ovary	ovary
3	chr22:28602400-28604400	Enhancers	HUVEC	blood vessel
4	chr22:28602600-28604600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr22:28602800-28604000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr22:28602800-28604600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr22:28603000-28604000	Enhancers	Colon Smooth Muscle	Colon
8	chr22:28603000-28604400	Enhancers	NHLF	lung
9	chr22:28603000-28604600	Enhancers	NH-A	brain
10	chr22:28603000-28605400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr22:28603200-28603600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr22:28603200-28604600	Enhancers	Osteobl	bone
13	chr22:28603200-28605200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr22:28603400-28604200	Enhancers	Rectal Smooth Muscle	rectum
15	chr22:28603400-28604400	Enhancers	NHDF-Ad	bronchial

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