Variant report

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10483141	1.00[CHB][hapmap]
rs10483148	1.00[CHB][hapmap]
rs12170637	1.00[CHB][hapmap]
rs1297607	1.00[CHB][hapmap]
rs13057007	0.82[CEU][hapmap]
rs13057353	0.82[CEU][hapmap]
rs13057948	0.85[CEU][hapmap]
rs134488	1.00[CHB][hapmap]
rs134501	1.00[CHB][hapmap]
rs134503	1.00[CHB][hapmap]
rs134504	1.00[CHB][hapmap]
rs134506	1.00[CHB][hapmap]
rs134509	1.00[CHB][hapmap]
rs134510	1.00[CHB][hapmap]
rs134514	1.00[CHB][hapmap]
rs134520	1.00[CHB][hapmap]
rs134521	1.00[CHB][hapmap]
rs134524	1.00[CHB][hapmap]
rs134528	1.00[CHB][hapmap]
rs135113	1.00[CEU][hapmap]
rs135638	1.00[ASN][1000 genomes]
rs135641	1.00[CHB][hapmap]
rs135642	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs135644	1.00[CHB][hapmap]
rs135645	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs135647	1.00[ASN][1000 genomes]
rs135649	1.00[CHB][hapmap]
rs138646	1.00[CHB][hapmap]
rs138680	1.00[CHB][hapmap]
rs16986177	1.00[CHB][hapmap]
rs16986254	1.00[CHB][hapmap]
rs16986257	1.00[CHB][hapmap]
rs16986266	1.00[CHB][hapmap]
rs2038287	1.00[CHB][hapmap]
rs2143420	1.00[CHB][hapmap]
rs2345011	1.00[CHB][hapmap]
rs28360522	0.82[CEU][hapmap];0.82[AFR][1000 genomes]
rs470101	1.00[CHB][hapmap]
rs7285440	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs767919	0.82[CEU][hapmap]
rs79104	1.00[CHB][hapmap]
rs79107	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28572200-28597800	Weak transcription	Dnd41	blood
2	chr22:28577000-28603600	Weak transcription	Aorta	Aorta
3	chr22:28577400-28584600	Weak transcription	Fetal Brain Female	brain
4	chr22:28577800-28600400	Weak transcription	Right Atrium	heart
5	chr22:28578000-28583200	Weak transcription	Fetal Brain Male	brain
6	chr22:28578400-28583600	Weak transcription	Fetal Muscle Leg	muscle
7	chr22:28578400-28583800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr22:28579200-28581800	Enhancers	Duodenum Mucosa	Duodenum
9	chr22:28579600-28584600	Weak transcription	Psoas Muscle	Psoas
10	chr22:28579600-28587400	Weak transcription	Lung	lung
11	chr22:28580200-28582800	Weak transcription	Fetal Heart	heart
12	chr22:28580200-28583600	Weak transcription	Fetal Lung	lung
13	chr22:28580400-28583800	Weak transcription	Brain Germinal Matrix	brain
14	chr22:28580800-28581400	Enhancers	Liver	Liver

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