Variant report

Variant	rs135638
Chromosome Location	chr22:28530659-28530660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10483141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10483148	0.90[AMR][1000 genomes]
rs135637	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs135641	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs135643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs135644	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs135645	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135649	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs135655	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs135659	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1569700	1.00[ASN][1000 genomes]
rs16985690	1.00[AFR][1000 genomes]
rs16985862	0.81[AMR][1000 genomes]
rs16985870	0.81[AMR][1000 genomes]
rs16985909	0.81[AMR][1000 genomes]
rs16985925	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16985933	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16985951	0.90[AMR][1000 genomes]
rs16986244	0.90[AMR][1000 genomes]
rs16986248	0.90[AMR][1000 genomes]
rs16986251	0.90[AMR][1000 genomes]
rs16986254	0.90[AMR][1000 genomes]
rs16986257	0.90[AMR][1000 genomes]
rs16986266	0.90[AMR][1000 genomes]
rs17391737	0.90[AMR][1000 genomes]
rs17480137	1.00[AFR][1000 genomes]
rs17480565	1.00[AFR][1000 genomes]
rs17481471	0.90[AMR][1000 genomes]
rs17482652	0.90[AMR][1000 genomes]
rs17483227	0.90[AMR][1000 genomes]
rs17483998	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2038286	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2345011	0.81[AMR][1000 genomes]
rs2881204	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5752697	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7285440	1.00[ASN][1000 genomes]
rs7286237	0.90[AMR][1000 genomes]
rs7290640	0.90[AMR][1000 genomes]
rs8135697	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28502400-28535800	Weak transcription	Right Ventricle	heart
2	chr22:28513200-28538000	Weak transcription	Dnd41	blood
3	chr22:28516800-28532600	Weak transcription	Aorta	Aorta
4	chr22:28516800-28534600	Weak transcription	Fetal Brain Female	brain
5	chr22:28517800-28533000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr22:28525800-28533000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr22:28526000-28530800	Weak transcription	Osteobl	bone
8	chr22:28528200-28535200	Weak transcription	Fetal Heart	heart
9	chr22:28529600-28535800	Weak transcription	Ovary	ovary
10	chr22:28530000-28535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr22:28530200-28532600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr22:28530200-28532600	Weak transcription	Fetal Lung	lung

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