Variant report

Variant	rs135659
Chromosome Location	chr22:28563452-28563453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10483141	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10483148	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10483150	0.84[EUR][1000 genomes]
rs134498	0.84[EUR][1000 genomes]
rs134501	0.84[EUR][1000 genomes]
rs134503	0.84[EUR][1000 genomes]
rs134504	0.84[EUR][1000 genomes]
rs134505	0.84[EUR][1000 genomes]
rs134508	0.84[EUR][1000 genomes]
rs134509	0.84[EUR][1000 genomes]
rs134510	0.84[EUR][1000 genomes]
rs134512	0.84[EUR][1000 genomes]
rs134513	0.84[EUR][1000 genomes]
rs134515	0.84[EUR][1000 genomes]
rs134516	0.84[EUR][1000 genomes]
rs134521	0.84[EUR][1000 genomes]
rs135637	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135638	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs135641	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135642	1.00[ASN][1000 genomes]
rs135643	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135644	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135645	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs135647	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs135649	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135655	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16985862	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16985870	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16985909	0.81[AMR][1000 genomes]
rs16985925	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16985933	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16985951	0.90[AMR][1000 genomes]
rs16986244	0.90[AMR][1000 genomes]
rs16986248	0.90[AMR][1000 genomes]
rs16986251	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16986254	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16986257	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16986266	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16986311	0.84[EUR][1000 genomes]
rs16986314	0.84[EUR][1000 genomes]
rs16986400	0.84[EUR][1000 genomes]
rs16986433	0.84[EUR][1000 genomes]
rs16986438	0.84[EUR][1000 genomes]
rs17391737	0.90[AMR][1000 genomes]
rs17481471	0.90[AMR][1000 genomes]
rs17482652	0.90[AMR][1000 genomes]
rs17483227	0.90[AMR][1000 genomes]
rs17483998	0.90[AMR][1000 genomes]
rs2038286	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2345011	0.81[AMR][1000 genomes]
rs2881204	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5752697	1.00[AMR][1000 genomes]
rs5762573	0.84[EUR][1000 genomes]
rs7286237	0.90[AMR][1000 genomes]
rs7290640	0.90[AMR][1000 genomes]
rs731050	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs79104	0.84[EUR][1000 genomes]
rs79107	0.84[EUR][1000 genomes]
rs79111	0.84[EUR][1000 genomes]
rs8135697	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28540200-28567800	Weak transcription	Gastric	stomach
2	chr22:28540800-28567800	Weak transcription	Small Intestine	intestine
3	chr22:28543400-28568800	Weak transcription	NHDF-Ad	bronchial
4	chr22:28543800-28567200	Weak transcription	Fetal Heart	heart
5	chr22:28548400-28566600	Weak transcription	Colon Smooth Muscle	Colon
6	chr22:28556800-28567000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr22:28557600-28567800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr22:28559600-28566800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr22:28559600-28566800	Weak transcription	Fetal Lung	lung
10	chr22:28559600-28566800	Weak transcription	Left Ventricle	heart
11	chr22:28559600-28567000	Weak transcription	Fetal Brain Male	brain
12	chr22:28559600-28567200	Weak transcription	Adipose Nuclei	Adipose
13	chr22:28559600-28567600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr22:28559600-28567800	Weak transcription	Ovary	ovary
15	chr22:28559800-28566800	Weak transcription	Dnd41	blood
16	chr22:28559800-28577400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr22:28560200-28567200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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