Variant report

Variant	rs135637
Chromosome Location	chr22:28529281-28529282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10483141	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483148	1.00[AMR][1000 genomes]
rs135638	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs135641	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135642	1.00[ASN][1000 genomes]
rs135643	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs135647	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs135649	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135659	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16985862	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16985870	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16985909	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs16985925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16985933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16985951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986244	1.00[AMR][1000 genomes]
rs16986248	1.00[AMR][1000 genomes]
rs16986251	1.00[AMR][1000 genomes]
rs16986254	1.00[AMR][1000 genomes]
rs16986257	1.00[AMR][1000 genomes]
rs16986266	1.00[AMR][1000 genomes]
rs17391737	0.80[AMR][1000 genomes]
rs17481471	0.80[AMR][1000 genomes]
rs17482652	0.80[AMR][1000 genomes]
rs17483227	0.80[AMR][1000 genomes]
rs17483998	0.80[AMR][1000 genomes]
rs2038286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2881204	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55868187	0.83[AMR][1000 genomes]
rs5752697	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7286237	0.80[AMR][1000 genomes]
rs7290640	0.80[AMR][1000 genomes]
rs731050	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28502400-28535800	Weak transcription	Right Ventricle	heart
2	chr22:28513200-28538000	Weak transcription	Dnd41	blood
3	chr22:28516800-28532600	Weak transcription	Aorta	Aorta
4	chr22:28516800-28534600	Weak transcription	Fetal Brain Female	brain
5	chr22:28517800-28533000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr22:28525800-28533000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr22:28526000-28530800	Weak transcription	Osteobl	bone
8	chr22:28526400-28529400	Weak transcription	Ovary	ovary
9	chr22:28526600-28529400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr22:28528200-28535200	Weak transcription	Fetal Heart	heart
11	chr22:28529000-28529600	ZNF genes & repeats	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links