Variant report

Variant	rs7286237
Chromosome Location	chr22:28371305-28371306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1000112	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10483139	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs10483141	1.00[CEU][hapmap];0.83[GIH][hapmap];0.90[AMR][1000 genomes]
rs12167128	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12170161	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs130411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs130414	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs135637	0.80[AMR][1000 genomes]
rs135638	0.90[AMR][1000 genomes]
rs135641	1.00[CEU][hapmap];0.80[AMR][1000 genomes]
rs135643	0.90[AMR][1000 genomes]
rs135644	1.00[CEU][hapmap];0.80[AMR][1000 genomes]
rs135645	1.00[CEU][hapmap];0.80[AMR][1000 genomes]
rs135647	0.90[AMR][1000 genomes]
rs135649	1.00[CEU][hapmap];0.80[AMR][1000 genomes]
rs135655	0.80[AMR][1000 genomes]
rs135659	0.90[AMR][1000 genomes]
rs138676	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs138679	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16985690	1.00[ASN][1000 genomes]
rs16985862	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16985870	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16985909	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16985925	0.80[AMR][1000 genomes]
rs16985933	0.80[AMR][1000 genomes]
rs16985951	0.80[AMR][1000 genomes]
rs17389267	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17391737	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17480137	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs17480313	1.00[ASN][1000 genomes]
rs17480369	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17480565	1.00[ASN][1000 genomes]
rs17480971	1.00[ASN][1000 genomes]
rs17481471	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17482652	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17483227	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17483998	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2038286	0.80[AMR][1000 genomes]
rs2345011	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2881204	0.80[AMR][1000 genomes]
rs34844050	1.00[ASN][1000 genomes]
rs35386208	1.00[ASN][1000 genomes]
rs35633908	1.00[ASN][1000 genomes]
rs55868187	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5752697	0.90[AMR][1000 genomes]
rs7286795	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7290640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8135697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8141993	1.00[ASN][1000 genomes]
rs926467	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28316400-28376800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr22:28316400-28378000	Weak transcription	Esophagus	oesophagus
3	chr22:28318800-28382000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr22:28319600-28383000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr22:28321400-28379000	Weak transcription	Primary B cells from cord blood	blood
6	chr22:28329400-28377800	Weak transcription	Primary T cells from cord blood	blood
7	chr22:28355400-28387800	Weak transcription	Fetal Brain Male	brain
8	chr22:28355600-28378000	Weak transcription	Gastric	stomach
9	chr22:28355800-28371800	Weak transcription	Right Ventricle	heart
10	chr22:28355800-28378000	Weak transcription	Aorta	Aorta
11	chr22:28355800-28378000	Weak transcription	Left Ventricle	heart
12	chr22:28356600-28378000	Weak transcription	Psoas Muscle	Psoas
13	chr22:28358600-28379400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr22:28359000-28377800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr22:28359200-28377800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr22:28360000-28371600	Weak transcription	Ovary	ovary
17	chr22:28360000-28379400	Weak transcription	Colonic Mucosa	Colon
18	chr22:28360200-28382800	Weak transcription	HSMM	muscle
19	chr22:28360800-28392400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr22:28362600-28375800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr22:28362800-28378000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr22:28363000-28377800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr22:28363800-28375000	Weak transcription	Lung	lung
24	chr22:28365200-28377600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr22:28366200-28378000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr22:28367600-28373800	Weak transcription	Dnd41	blood
27	chr22:28367600-28377800	Weak transcription	Colon Smooth Muscle	Colon
28	chr22:28367800-28377800	Weak transcription	Brain Anterior Caudate	brain
29	chr22:28368200-28373600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr22:28368200-28376000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr22:28368400-28374600	Weak transcription	Adipose Nuclei	Adipose
32	chr22:28368400-28377800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr22:28368400-28383400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr22:28368600-28371600	Weak transcription	Osteobl	bone
35	chr22:28368600-28374400	Weak transcription	Brain Germinal Matrix	brain
36	chr22:28368600-28377600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr22:28368600-28377800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr22:28368800-28372000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr22:28368800-28373800	Weak transcription	Fetal Muscle Leg	muscle
40	chr22:28368800-28376800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr22:28368800-28377800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr22:28368800-28385800	Weak transcription	Brain Angular Gyrus	brain
43	chr22:28369000-28381200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr22:28369200-28371600	Weak transcription	Small Intestine	intestine
45	chr22:28369200-28398400	Weak transcription	Hela-S3	cervix
46	chr22:28369400-28373800	Weak transcription	Fetal Intestine Large	intestine
47	chr22:28369400-28373800	Weak transcription	Fetal Intestine Small	intestine
48	chr22:28369400-28378000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr22:28369400-28378000	Weak transcription	Liver	Liver
50	chr22:28369400-28378000	Weak transcription	NHLF	lung

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