Variant report

Variant	rs35386208
Chromosome Location	chr22:28335698-28335699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1000112	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483139	0.92[ASN][1000 genomes]
rs16985690	1.00[ASN][1000 genomes]
rs17389267	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17480137	1.00[ASN][1000 genomes]
rs17480313	1.00[ASN][1000 genomes]
rs17480369	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17480565	1.00[ASN][1000 genomes]
rs17480971	1.00[ASN][1000 genomes]
rs17481471	1.00[ASN][1000 genomes]
rs34844050	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35633908	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7286237	1.00[ASN][1000 genomes]
rs7290640	1.00[ASN][1000 genomes]
rs8135697	0.84[ASN][1000 genomes]
rs8141993	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28316200-28337400	Weak transcription	Ovary	ovary
2	chr22:28316400-28336800	Weak transcription	Fetal Muscle Leg	muscle
3	chr22:28316400-28342600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr22:28316400-28358600	Weak transcription	Placenta	Placenta
5	chr22:28316400-28370200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr22:28316400-28376800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr22:28316400-28378000	Weak transcription	Esophagus	oesophagus
8	chr22:28316600-28348400	Weak transcription	Brain Substantia Nigra	brain
9	chr22:28316800-28336600	Weak transcription	Fetal Intestine Large	intestine
10	chr22:28316800-28340400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr22:28317000-28338800	Weak transcription	Fetal Intestine Small	intestine
12	chr22:28317000-28340800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr22:28317000-28348200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr22:28317200-28336600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr22:28317600-28340800	Weak transcription	Thymus	Thymus
16	chr22:28317800-28342600	Weak transcription	Small Intestine	intestine
17	chr22:28317800-28345200	Weak transcription	HepG2	liver
18	chr22:28318800-28382000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr22:28319600-28340800	Weak transcription	Fetal Thymus	thymus
20	chr22:28319600-28358000	Weak transcription	Brain Germinal Matrix	brain
21	chr22:28319600-28383000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr22:28320800-28347800	Weak transcription	HUVEC	blood vessel
23	chr22:28321000-28354800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr22:28321200-28358400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr22:28321400-28340400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr22:28321400-28379000	Weak transcription	Primary B cells from cord blood	blood
27	chr22:28321600-28345000	Weak transcription	Fetal Lung	lung
28	chr22:28321800-28342800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr22:28322000-28365200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr22:28322000-28366200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr22:28322200-28339600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr22:28323800-28346000	Weak transcription	Dnd41	blood
33	chr22:28326800-28368600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr22:28327000-28339200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr22:28327000-28348000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr22:28327000-28348400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr22:28327200-28339200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr22:28327400-28347800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr22:28329400-28340800	Weak transcription	Pancreas	Pancrea
40	chr22:28329400-28347800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr22:28329400-28348200	Weak transcription	Adipose Nuclei	Adipose
42	chr22:28329400-28377800	Weak transcription	Primary T cells from cord blood	blood
43	chr22:28329800-28344000	Weak transcription	Liver	Liver
44	chr22:28332200-28337600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr22:28332200-28345400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr22:28332600-28343000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr22:28333600-28343400	Weak transcription	Fetal Heart	heart
48	chr22:28335200-28338200	Weak transcription	Fetal Stomach	stomach

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