Variant report

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10483141	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10483148	1.00[CHB][hapmap]
rs12170637	1.00[CHB][hapmap]
rs1297607	1.00[CHB][hapmap]
rs13057007	0.82[CEU][hapmap]
rs13058493	1.00[MEX][hapmap]
rs134488	1.00[CHB][hapmap]
rs134501	1.00[CHB][hapmap]
rs134503	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs134504	1.00[CHB][hapmap]
rs134506	1.00[CHB][hapmap]
rs134509	1.00[CHB][hapmap]
rs134510	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs134514	1.00[CHB][hapmap]
rs134520	1.00[CHB][hapmap]
rs134521	1.00[CHB][hapmap]
rs134524	1.00[CHB][hapmap]
rs134528	1.00[CHB][hapmap]
rs134547	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs135113	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs135638	1.00[ASN][1000 genomes]
rs135641	1.00[CHB][hapmap]
rs135642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs135644	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs135645	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs135647	1.00[ASN][1000 genomes]
rs135649	1.00[CHB][hapmap]
rs138680	1.00[CHB][hapmap]
rs1569700	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986177	1.00[CHB][hapmap]
rs16986254	1.00[CHB][hapmap]
rs16986257	1.00[CHB][hapmap]
rs16986266	1.00[CHB][hapmap]
rs2038287	1.00[CHB][hapmap]
rs2143420	1.00[CHB][hapmap]
rs28360522	0.82[CEU][hapmap];1.00[MEX][hapmap]
rs767919	0.82[CEU][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap]
rs79104	1.00[CHB][hapmap]
rs79107	1.00[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28600200-28616400	Weak transcription	Ovary	ovary
2	chr22:28604600-28617800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr22:28611800-28616400	Weak transcription	Left Ventricle	heart
4	chr22:28612000-28612600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr22:28612200-28625600	Weak transcription	Aorta	Aorta
6	chr22:28612200-28634800	Weak transcription	Dnd41	blood

Quick Search: