Variant report

Variant	rs6519751
Chromosome Location	chr22:28845498-28845499
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10439931	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10483148	1.00[ASN][1000 genomes]
rs10483150	1.00[ASN][1000 genomes]
rs12166475	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12167532	0.84[AMR][1000 genomes]
rs134493	1.00[ASN][1000 genomes]
rs134498	1.00[ASN][1000 genomes]
rs134501	1.00[ASN][1000 genomes]
rs134503	1.00[ASN][1000 genomes]
rs134504	1.00[ASN][1000 genomes]
rs134505	1.00[ASN][1000 genomes]
rs134508	1.00[ASN][1000 genomes]
rs134509	1.00[ASN][1000 genomes]
rs134510	1.00[ASN][1000 genomes]
rs134512	1.00[ASN][1000 genomes]
rs134513	1.00[ASN][1000 genomes]
rs134515	1.00[ASN][1000 genomes]
rs134516	1.00[ASN][1000 genomes]
rs134521	1.00[ASN][1000 genomes]
rs134524	0.81[AMR][1000 genomes]
rs134528	1.00[ASN][1000 genomes]
rs134544	0.81[AFR][1000 genomes]
rs134547	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16986244	1.00[ASN][1000 genomes]
rs16986248	1.00[ASN][1000 genomes]
rs16986251	1.00[ASN][1000 genomes]
rs16986254	1.00[ASN][1000 genomes]
rs16986257	1.00[ASN][1000 genomes]
rs16986266	1.00[ASN][1000 genomes]
rs16986288	1.00[ASN][1000 genomes]
rs16986311	1.00[ASN][1000 genomes]
rs16986314	1.00[ASN][1000 genomes]
rs16986398	0.84[AMR][1000 genomes]
rs16986400	1.00[ASN][1000 genomes]
rs16986433	1.00[ASN][1000 genomes]
rs16986438	1.00[ASN][1000 genomes]
rs16986451	1.00[ASN][1000 genomes]
rs16986469	1.00[ASN][1000 genomes]
rs35438111	1.00[ASN][1000 genomes]
rs5752746	0.86[AFR][1000 genomes]
rs5762574	1.00[ASN][1000 genomes]
rs6519752	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7289625	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73430118	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs79104	1.00[ASN][1000 genomes]
rs79107	1.00[ASN][1000 genomes]
rs79111	1.00[ASN][1000 genomes]
rs9613609	0.85[AFR][1000 genomes]
rs9625498	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28839800-28861200	Weak transcription	Ovary	ovary
2	chr22:28840000-28847000	Weak transcription	Fetal Lung	lung
3	chr22:28840000-28849600	Weak transcription	Fetal Brain Male	brain
4	chr22:28841200-28845800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr22:28842600-28849600	Weak transcription	Psoas Muscle	Psoas
6	chr22:28844200-28846000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr22:28844600-28845600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr22:28844600-28846000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr22:28844800-28846000	Enhancers	HUVEC	blood vessel
10	chr22:28845200-28846800	Weak transcription	Fetal Intestine Small	intestine
11	chr22:28845400-28846000	Weak transcription	Fetal Intestine Large	intestine
12	chr22:28845400-28850000	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links