Variant report

Variant	rs9608696
Chromosome Location	chr22:29066086-29066087
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12165715	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs12165893	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs12166245	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs12168765	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs12169262	1.00[CEU][hapmap]
rs12169460	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs1474961	0.83[CEU][hapmap]
rs16986509	0.91[CEU][hapmap]
rs17507066	0.83[CEU][hapmap]
rs2013784	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2144922	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs6005807	0.91[CEU][hapmap]
rs695346	1.00[JPT][hapmap]
rs695571	1.00[JPT][hapmap]
rs7289534	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs7289625	1.00[CEU][hapmap]
rs7291268	0.91[CEU][hapmap]
rs7293232	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs9306457	0.91[CEU][hapmap]
rs9620797	0.91[CEU][hapmap]
rs9620804	0.91[CEU][hapmap]
rs9620808	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs9620810	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs9620811	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs9625512	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs9625513	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs9625514	0.92[CEU][hapmap];0.96[YRI][hapmap]
rs9625520	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs9625521	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs9625522	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs9625523	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs9625524	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs9625534	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv459867	chr22:28993183-29109036	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv588881	chr22:28993183-29109036	Weak transcription Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1061684	chr22:29026341-29088590	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv9895	chr22:29029961-29184277	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv829148	chr22:29058867-29066285	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv819641	chr22:29062137-29066091	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv829151	chr22:29065128-29066285	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv993498	chr22:29065128-29068162	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv829152	chr22:29065128-29068619	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv1064624	chr22:29065528-29130728	Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29046400-29073800	Weak transcription	Ovary	ovary
2	chr22:29052600-29074600	Weak transcription	Colon Smooth Muscle	Colon
3	chr22:29053400-29066800	Weak transcription	Fetal Lung	lung
4	chr22:29056800-29074600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr22:29057600-29070200	Weak transcription	Fetal Stomach	stomach
6	chr22:29058000-29070200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr22:29064600-29074800	Weak transcription	Left Ventricle	heart
8	chr22:29064800-29069800	Weak transcription	HUVEC	blood vessel
9	chr22:29065600-29067000	Enhancers	NHDF-Ad	bronchial
10	chr22:29065800-29066400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
11	chr22:29065800-29067200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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