Variant report

Variant	rs16987099
Chromosome Location	chr22:29505365-29505366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs132273	0.86[ASN][1000 genomes]
rs16987043	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16987073	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16987081	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16987136	0.86[ASN][1000 genomes]
rs16987139	0.86[ASN][1000 genomes]
rs16987147	0.86[ASN][1000 genomes]
rs1807578	1.00[AFR][1000 genomes]
rs4429563	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4508707	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6519774	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71327332	0.86[ASN][1000 genomes]
rs73882455	1.00[ASN][1000 genomes]
rs73882458	1.00[ASN][1000 genomes]
rs8141696	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8141812	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8142699	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29475600-29505600	Weak transcription	Spleen	Spleen
2	chr22:29483400-29550200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr22:29486600-29519000	Weak transcription	Fetal Brain Male	brain
4	chr22:29488400-29521200	Weak transcription	Lung	lung
5	chr22:29490000-29514000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr22:29490400-29508000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr22:29490400-29539800	Weak transcription	Psoas Muscle	Psoas
8	chr22:29491200-29521200	Weak transcription	Colonic Mucosa	Colon
9	chr22:29491600-29522200	Weak transcription	Liver	Liver
10	chr22:29491800-29505400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr22:29493200-29505400	Weak transcription	Right Ventricle	heart
12	chr22:29493200-29511600	Weak transcription	Gastric	stomach
13	chr22:29493200-29521000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr22:29493200-29521200	Weak transcription	Pancreas	Pancrea
15	chr22:29493200-29536400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr22:29493400-29505400	Weak transcription	Small Intestine	intestine
17	chr22:29493400-29516400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr22:29493800-29511600	Weak transcription	Fetal Heart	heart
19	chr22:29494200-29505400	Weak transcription	HepG2	liver
20	chr22:29494600-29506000	Weak transcription	Left Ventricle	heart
21	chr22:29495000-29505600	Weak transcription	Right Atrium	heart
22	chr22:29495000-29509200	Weak transcription	Fetal Brain Female	brain
23	chr22:29495200-29505400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr22:29495200-29505400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr22:29495200-29505800	Weak transcription	Adipose Nuclei	Adipose
26	chr22:29495200-29516600	Weak transcription	Esophagus	oesophagus
27	chr22:29495400-29505400	Weak transcription	Fetal Intestine Large	intestine
28	chr22:29496600-29505600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr22:29498000-29505400	Weak transcription	Fetal Kidney	kidney
30	chr22:29498400-29505800	Weak transcription	Fetal Thymus	thymus
31	chr22:29498800-29509200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr22:29499400-29506000	Weak transcription	Thymus	Thymus
33	chr22:29499400-29508000	Weak transcription	Brain Angular Gyrus	brain
34	chr22:29499400-29508000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr22:29499400-29508000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr22:29499600-29505400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr22:29499600-29505600	Weak transcription	Fetal Lung	lung
38	chr22:29499600-29506400	Weak transcription	Brain Anterior Caudate	brain
39	chr22:29499600-29507800	Weak transcription	Brain Substantia Nigra	brain
40	chr22:29499800-29507800	Weak transcription	Brain Hippocampus Middle	brain
41	chr22:29499800-29509600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr22:29501800-29505600	Weak transcription	Ovary	ovary
43	chr22:29503000-29505600	Strong transcription	Fetal Stomach	stomach
44	chr22:29503200-29505400	Weak transcription	Fetal Muscle Leg	muscle
45	chr22:29503200-29505600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr22:29503200-29506000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr22:29503200-29506600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr22:29503400-29505600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr22:29503400-29507400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr22:29503600-29506600	Enhancers	Placenta	Placenta

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