Variant report

Variant	rs8142699
Chromosome Location	chr22:29501448-29501449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29500096..29501834-chr22:29533331..29535067,2	K562	blood:
2	chr22:29500127..29504007-chr22:29504582..29508523,3	K562	blood:

Variant related genes	Relation type
ENSG00000226772	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs132273	0.86[ASN][1000 genomes]
rs16987043	1.00[ASN][1000 genomes]
rs16987073	1.00[ASN][1000 genomes]
rs16987081	1.00[ASN][1000 genomes]
rs16987099	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16987136	0.86[ASN][1000 genomes]
rs16987139	0.86[ASN][1000 genomes]
rs16987147	0.86[ASN][1000 genomes]
rs4429563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4508707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6519774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71327332	0.86[ASN][1000 genomes]
rs73882455	1.00[ASN][1000 genomes]
rs73882458	1.00[ASN][1000 genomes]
rs8141696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8141812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29475600-29505600	Weak transcription	Spleen	Spleen
2	chr22:29483400-29550200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr22:29486600-29519000	Weak transcription	Fetal Brain Male	brain
4	chr22:29488400-29521200	Weak transcription	Lung	lung
5	chr22:29490000-29501600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr22:29490000-29505200	Weak transcription	Aorta	Aorta
7	chr22:29490000-29514000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr22:29490200-29502800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr22:29490200-29503600	Weak transcription	HMEC	breast
10	chr22:29490400-29508000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr22:29490400-29539800	Weak transcription	Psoas Muscle	Psoas
12	chr22:29491200-29521200	Weak transcription	Colonic Mucosa	Colon
13	chr22:29491600-29522200	Weak transcription	Liver	Liver
14	chr22:29491800-29503600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr22:29491800-29504400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr22:29491800-29505400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr22:29492000-29503800	Weak transcription	NHDF-Ad	bronchial
18	chr22:29493200-29501600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr22:29493200-29503600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr22:29493200-29504200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr22:29493200-29504400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr22:29493200-29505400	Weak transcription	Right Ventricle	heart
23	chr22:29493200-29511600	Weak transcription	Gastric	stomach
24	chr22:29493200-29521000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr22:29493200-29521200	Weak transcription	Pancreas	Pancrea
26	chr22:29493200-29536400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr22:29493400-29505400	Weak transcription	Small Intestine	intestine
28	chr22:29493400-29516400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr22:29493600-29502600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr22:29493800-29511600	Weak transcription	Fetal Heart	heart
31	chr22:29494200-29505400	Weak transcription	HepG2	liver
32	chr22:29494600-29506000	Weak transcription	Left Ventricle	heart
33	chr22:29495000-29502600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr22:29495000-29504800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr22:29495000-29505600	Weak transcription	Right Atrium	heart
36	chr22:29495000-29509200	Weak transcription	Fetal Brain Female	brain
37	chr22:29495200-29503800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr22:29495200-29505400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr22:29495200-29505400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr22:29495200-29505800	Weak transcription	Adipose Nuclei	Adipose
41	chr22:29495200-29516600	Weak transcription	Esophagus	oesophagus
42	chr22:29495400-29503600	Weak transcription	NHEK	skin
43	chr22:29495400-29505400	Weak transcription	Fetal Intestine Large	intestine
44	chr22:29495600-29504200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr22:29496000-29504000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr22:29496600-29505600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr22:29498000-29503600	Weak transcription	Placenta	Placenta
48	chr22:29498000-29505400	Weak transcription	Fetal Kidney	kidney
49	chr22:29498400-29502800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr22:29498400-29505800	Weak transcription	Fetal Thymus	thymus

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