Variant report

Variant	rs16988799
Chromosome Location	chr19:51503285-51503286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10403407	1.00[CHB][hapmap]
rs10409072	1.00[CHB][hapmap]
rs10426	0.86[YRI][hapmap]
rs11084044	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11084045	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11084046	0.88[ASW][hapmap];1.00[CHB][hapmap];0.85[MEX][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11667107	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11672663	0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1697545	1.00[CHB][hapmap]
rs16988801	1.00[ASW][hapmap];0.86[CEU][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4299259	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6072	1.00[CHB][hapmap]
rs7260326	1.00[CHD][hapmap]
rs73936105	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058277	chr19:51488544-51509847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51502200-51503400	Genic enhancers	NHEK	skin
2	chr19:51502400-51503400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr19:51503000-51503400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr19:51503000-51503800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr19:51503200-51504200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr19:51503200-51506000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr19:51503200-51506000	Flanking Active TSS	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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