Variant report

Variant	rs10409072
Chromosome Location	chr19:51503331-51503332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:51503307-51503343	MCF-7	breast:	n/a	n/a
2	CTCF	chr19:51503280-51503430	GM12866	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51432897..51433716-chr19:51502734..51503640,2	MCF-7	breast:

Variant related genes	Relation type
KLK8	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10401897	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10401906	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10403407	1.00[CHB][hapmap]
rs10404395	1.00[ASN][1000 genomes]
rs10407580	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10407943	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10408459	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10409565	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10410942	1.00[ASN][1000 genomes]
rs10415816	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10418308	0.86[EUR][1000 genomes]
rs10451448	1.00[GIH][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes]
rs11084046	1.00[CHB][hapmap]
rs13344653	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13345336	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1697545	1.00[CHB][hapmap]
rs16988799	1.00[CHB][hapmap]
rs28528952	1.00[ASN][1000 genomes]
rs28707546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34542531	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56707394	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6072	1.00[CHB][hapmap]
rs7255673	0.86[EUR][1000 genomes]
rs73595598	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058277	chr19:51488544-51509847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51502200-51503400	Genic enhancers	NHEK	skin
2	chr19:51502400-51503400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr19:51503000-51503400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr19:51503000-51503800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr19:51503200-51504200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr19:51503200-51506000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr19:51503200-51506000	Flanking Active TSS	HMEC	breast

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