Variant report

Variant	rs10451448
Chromosome Location	chr19:51497564-51497565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10401897	0.93[EUR][1000 genomes]
rs10401906	0.93[EUR][1000 genomes]
rs10407580	0.93[EUR][1000 genomes]
rs10407943	0.93[EUR][1000 genomes]
rs10408459	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10409072	1.00[GIH][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes]
rs10409565	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10418308	1.00[CEU][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13344653	0.93[EUR][1000 genomes]
rs13345336	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes]
rs28707546	0.93[EUR][1000 genomes]
rs56707394	0.82[EUR][1000 genomes]
rs7255673	1.00[CEU][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73595598	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058277	chr19:51488544-51509847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51494200-51498000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr19:51496400-51499200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr19:51496600-51499200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr19:51496600-51502000	Weak transcription	NHEK	skin
5	chr19:51496600-51503000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr19:51497200-51498000	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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