Variant report

Variant	rs73595598
Chromosome Location	chr19:51494454-51494455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10401897	0.86[EUR][1000 genomes]
rs10401906	0.86[EUR][1000 genomes]
rs10407580	0.86[EUR][1000 genomes]
rs10407943	0.86[EUR][1000 genomes]
rs10408459	0.86[EUR][1000 genomes]
rs10409072	0.86[EUR][1000 genomes]
rs10418308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10451448	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13344653	0.86[EUR][1000 genomes]
rs13345336	0.86[EUR][1000 genomes]
rs28707546	0.86[EUR][1000 genomes]
rs7255673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064207	chr19:51474525-51497278	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1058277	chr19:51488544-51509847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51493600-51495200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr19:51493800-51496800	Enhancers	HMEC	breast
3	chr19:51494000-51494600	Enhancers	Stomach Mucosa	stomach
4	chr19:51494200-51498000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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