Variant report

Variant	rs7255673
Chromosome Location	chr19:51492314-51492315
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10401897	0.86[EUR][1000 genomes]
rs10401906	0.86[EUR][1000 genomes]
rs10407580	0.86[EUR][1000 genomes]
rs10407943	0.86[EUR][1000 genomes]
rs10408459	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10409072	0.86[EUR][1000 genomes]
rs10409565	1.00[CEU][hapmap]
rs10418308	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10451448	1.00[CEU][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13344653	0.86[EUR][1000 genomes]
rs13345336	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs28707546	0.86[EUR][1000 genomes]
rs73595598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064207	chr19:51474525-51497278	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1058277	chr19:51488544-51509847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51487400-51494200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr19:51487600-51492800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:51487600-51493800	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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