Variant report

Variant	rs10410942
Chromosome Location	chr19:51503653-51503654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10404395	1.00[ASN][1000 genomes]
rs10408459	1.00[ASN][1000 genomes]
rs10409072	1.00[ASN][1000 genomes]
rs10409565	1.00[ASN][1000 genomes]
rs10415816	1.00[ASN][1000 genomes]
rs1122466	0.93[EUR][1000 genomes]
rs28528952	1.00[ASN][1000 genomes]
rs34542531	1.00[ASN][1000 genomes]
rs56707394	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058277	chr19:51488544-51509847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51503000-51503800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr19:51503200-51504200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:51503200-51506000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr19:51503200-51506000	Flanking Active TSS	HMEC	breast
5	chr19:51503400-51506000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr19:51503400-51506000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr19:51503400-51506000	Flanking Active TSS	NHEK	skin
8	chr19:51503600-51505800	Active TSS	Esophagus	oesophagus
9	chr19:51503600-51506400	Active TSS	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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