Variant report

Variant	rs10415816
Chromosome Location	chr19:51504074-51504075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10401897	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10401906	0.81[EUR][1000 genomes]
rs10404395	1.00[ASN][1000 genomes]
rs10407580	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10407943	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10408459	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10409072	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10409565	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10410942	1.00[ASN][1000 genomes]
rs13344653	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13345336	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28528952	1.00[ASN][1000 genomes]
rs28707546	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34542531	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56707394	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058277	chr19:51488544-51509847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51503200-51504200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:51503200-51506000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr19:51503200-51506000	Flanking Active TSS	HMEC	breast
4	chr19:51503400-51506000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr19:51503400-51506000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr19:51503400-51506000	Flanking Active TSS	NHEK	skin
7	chr19:51503600-51505800	Active TSS	Esophagus	oesophagus
8	chr19:51503600-51506400	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr19:51503800-51505400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr19:51503800-51506200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr19:51504000-51504200	Flanking Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr19:51504000-51504200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr19:51504000-51504400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
14	chr19:51504000-51504400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
15	chr19:51504000-51505000	Flanking Active TSS	K562	blood
16	chr19:51504000-51506000	Active TSS	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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