Variant report

Variant	rs16988993
Chromosome Location	chr22:31103788-31103789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11912793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11913730	1.00[AMR][1000 genomes]
rs35941285	1.00[AMR][1000 genomes]
rs57114503	1.00[AMR][1000 genomes]
rs6518714	1.00[AMR][1000 genomes]
rs7287698	1.00[AMR][1000 genomes]
rs73400353	1.00[AMR][1000 genomes]
rs73400355	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400364	1.00[AMR][1000 genomes]
rs73400370	1.00[AMR][1000 genomes]
rs73400382	1.00[AMR][1000 genomes]
rs8137597	1.00[AMR][1000 genomes]
rs8138072	1.00[AMR][1000 genomes]
rs8139321	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8143079	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31092200-31111000	Weak transcription	Fetal Intestine Small	intestine
2	chr22:31099800-31103800	Enhancers	Fetal Brain Male	brain
3	chr22:31101200-31108000	Weak transcription	Gastric	stomach
4	chr22:31101800-31104800	Weak transcription	Pancreas	Pancrea
5	chr22:31102200-31105400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr22:31102800-31103800	Enhancers	GM12878-XiMat	blood
7	chr22:31103000-31106000	Weak transcription	NH-A	brain
8	chr22:31103000-31108000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr22:31103000-31112800	Weak transcription	Brain Hippocampus Middle	brain
10	chr22:31103200-31112800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr22:31103200-31112800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links