Variant report

Variant	rs35941285
Chromosome Location	chr22:31114507-31114508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31108562..31111393-chr22:31113342..31115524,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11912793	1.00[AMR][1000 genomes]
rs11913730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13053186	0.91[AFR][1000 genomes]
rs16988993	1.00[AMR][1000 genomes]
rs56348572	0.97[AFR][1000 genomes]
rs57114503	1.00[AMR][1000 genomes]
rs6518714	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7287698	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400344	0.91[AFR][1000 genomes]
rs73400346	1.00[AFR][1000 genomes]
rs73400353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400355	1.00[AMR][1000 genomes]
rs73400364	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400382	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8137597	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8138072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8139321	1.00[AMR][1000 genomes]
rs8143079	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31112600-31114600	Enhancers	HMEC	breast
2	chr22:31112600-31117000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr22:31112800-31114600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr22:31112800-31114600	Enhancers	Osteobl	bone
5	chr22:31112800-31114800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr22:31112800-31114800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr22:31112800-31115200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr22:31112800-31115400	Enhancers	HSMM	muscle
9	chr22:31112800-31115600	Enhancers	Brain Hippocampus Middle	brain
10	chr22:31113200-31115200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr22:31113200-31115400	Enhancers	Brain Cingulate Gyrus	brain
12	chr22:31113200-31115400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr22:31113400-31114600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr22:31113800-31132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr22:31114000-31140600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr22:31114200-31115000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr22:31114200-31115000	Weak transcription	Brain Anterior Caudate	brain
18	chr22:31114200-31115400	Enhancers	NHDF-Ad	bronchial
19	chr22:31114200-31115800	Weak transcription	Spleen	Spleen
20	chr22:31114200-31116000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr22:31114200-31118000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr22:31114200-31123000	Weak transcription	HUVEC	blood vessel
23	chr22:31114400-31114600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr22:31114400-31114800	Weak transcription	Brain Substantia Nigra	brain
25	chr22:31114400-31115400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr22:31114400-31116400	Weak transcription	Brain Angular Gyrus	brain

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