Variant report

Variant	rs56348572
Chromosome Location	chr22:31112117-31112118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11913730	0.97[AFR][1000 genomes]
rs13053186	0.87[AFR][1000 genomes]
rs35941285	0.97[AFR][1000 genomes]
rs6518714	0.85[AFR][1000 genomes]
rs7287698	0.85[AFR][1000 genomes]
rs73400344	0.94[AFR][1000 genomes]
rs73400346	0.97[AFR][1000 genomes]
rs73400353	0.97[AFR][1000 genomes]
rs73400364	0.95[AFR][1000 genomes]
rs73400370	0.97[AFR][1000 genomes]
rs73400382	0.85[AFR][1000 genomes]
rs8137597	0.90[AFR][1000 genomes]
rs8138072	0.97[AFR][1000 genomes]
rs8143079	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31103000-31112800	Weak transcription	Brain Hippocampus Middle	brain
2	chr22:31103200-31112800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr22:31103200-31112800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr22:31108800-31113200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr22:31111400-31112600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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