Variant report

Variant	rs73400346
Chromosome Location	chr22:31105942-31105943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11913730	1.00[AFR][1000 genomes]
rs13053186	0.91[AFR][1000 genomes]
rs35040353	1.00[EUR][1000 genomes]
rs35941285	1.00[AFR][1000 genomes]
rs36107783	1.00[EUR][1000 genomes]
rs56348572	0.97[AFR][1000 genomes]
rs6518714	0.88[AFR][1000 genomes]
rs7287698	0.88[AFR][1000 genomes]
rs73400344	0.91[AFR][1000 genomes]
rs73400353	1.00[AFR][1000 genomes]
rs73400364	0.98[AFR][1000 genomes]
rs73400370	1.00[AFR][1000 genomes]
rs73400382	0.88[AFR][1000 genomes]
rs8137597	0.94[AFR][1000 genomes]
rs8138072	1.00[AFR][1000 genomes]
rs8143079	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31092200-31111000	Weak transcription	Fetal Intestine Small	intestine
2	chr22:31101200-31108000	Weak transcription	Gastric	stomach
3	chr22:31103000-31106000	Weak transcription	NH-A	brain
4	chr22:31103000-31108000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr22:31103000-31112800	Weak transcription	Brain Hippocampus Middle	brain
6	chr22:31103200-31112800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr22:31103200-31112800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr22:31105400-31106200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr22:31105400-31106600	Enhancers	GM12878-XiMat	blood
10	chr22:31105600-31106200	Enhancers	Primary T cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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