Variant report

Variant	rs16989543
Chromosome Location	chr22:32238975-32238976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32232309..32234594-chr22:32236241..32239757,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252909	Chromatin interaction
ENSG00000100150	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12159957	1.00[EUR][1000 genomes]
rs12159985	1.00[EUR][1000 genomes]
rs16989542	0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16989544	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989546	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989547	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57168894	1.00[EUR][1000 genomes]
rs5753777	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58244423	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5998145	1.00[EUR][1000 genomes]
rs5998146	1.00[EUR][1000 genomes]
rs61731662	1.00[AMR][1000 genomes]
rs61731664	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61731667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7288786	1.00[EUR][1000 genomes]
rs8143023	0.85[EUR][1000 genomes]
rs9680698	1.00[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32172200-32254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr22:32188800-32259600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr22:32192400-32242200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr22:32192400-32251000	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr22:32192400-32266600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr22:32193000-32250600	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr22:32193200-32246000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr22:32193200-32250600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr22:32197200-32251000	Strong transcription	Primary B cells from cord blood	blood
10	chr22:32205200-32257600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr22:32207800-32244000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr22:32209000-32245800	Strong transcription	Primary T cells from cord blood	blood
13	chr22:32209000-32254600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr22:32210600-32251000	Strong transcription	Fetal Stomach	stomach
15	chr22:32216000-32239200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr22:32218200-32242200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr22:32218600-32241200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr22:32218800-32241000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr22:32218800-32247200	Weak transcription	Psoas Muscle	Psoas
20	chr22:32219000-32240200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr22:32219200-32243800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr22:32220000-32239600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr22:32220000-32240400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr22:32220200-32241000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr22:32220400-32240800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr22:32221000-32241800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr22:32221400-32254600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr22:32222000-32240800	Weak transcription	Small Intestine	intestine
29	chr22:32223200-32242800	Weak transcription	Fetal Brain Male	brain
30	chr22:32226200-32263200	Weak transcription	Stomach Mucosa	stomach
31	chr22:32226600-32247800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr22:32226800-32242000	Weak transcription	NH-A	brain
33	chr22:32226800-32247000	Weak transcription	Fetal Heart	heart
34	chr22:32227000-32240400	Weak transcription	HepG2	liver
35	chr22:32227000-32254200	Strong transcription	Fetal Intestine Small	intestine
36	chr22:32227200-32242000	Weak transcription	A549	lung
37	chr22:32227400-32242000	Weak transcription	NHDF-Ad	bronchial
38	chr22:32227600-32254200	Strong transcription	Duodenum Mucosa	Duodenum
39	chr22:32228600-32241200	Weak transcription	HUVEC	blood vessel
40	chr22:32229000-32246200	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr22:32229600-32254600	Strong transcription	Fetal Muscle Trunk	muscle
42	chr22:32229800-32241000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr22:32229800-32250400	Strong transcription	Thymus	Thymus
44	chr22:32229800-32251000	Strong transcription	Fetal Muscle Leg	muscle
45	chr22:32229800-32253000	Strong transcription	Fetal Intestine Large	intestine
46	chr22:32230000-32248800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr22:32230200-32245200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr22:32230600-32250800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr22:32230800-32246600	Strong transcription	Placenta	Placenta
50	chr22:32231000-32250400	Strong transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links