Variant report
Variant | rs169922 |
---|---|
Chromosome Location | chr2:234778250-234778251 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:5 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:234777958..234779608-chr2:234782094..234784037,2 | MCF-7 | breast: | |
2 | 2:234635414-234639782..2:234772667-234780240 | Hela-S3 | cervix: | |
3 | 2:234683624-234705119..2:234772667-234780240 | Hela-S3 | cervix: | |
4 | 2:234772667-234780240..2:234954947-234965240 | Hela-S3 | cervix: | |
5 | 2:234543708-234558325..2:234772667-234780240 | Hela-S3 | cervix: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000242515 | Chromatin interaction |
ENSG00000243135 | Chromatin interaction |
ENSG00000241635 | Chromatin interaction |
ENSG00000234143 | Chromatin interaction |
ENSG00000185038 | Chromatin interaction |
ENSG00000072080 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs12692249 | 0.97[ASN][1000 genomes] |
rs13003628 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs169925 | 0.86[ASN][1000 genomes] |
rs183331 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs213542 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs213545 | 0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2215172 | 0.97[EUR][1000 genomes] |
rs4663339 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs528971 | 0.97[ASN][1000 genomes] |
rs531643 | 0.97[ASN][1000 genomes] |
rs554699 | 0.87[ASN][1000 genomes] |
rs609942 | 0.97[ASN][1000 genomes] |
rs6431643 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6431644 | 0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs648818 | 0.87[ASN][1000 genomes] |
rs689101 | 0.97[ASN][1000 genomes] |
rs7596657 | 0.97[EUR][1000 genomes] |
rs887062 | 0.97[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1013712 | chr2:234558457-235495825 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
2 | nsv532476 | chr2:234595695-235134381 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:234777200-234779000 | Weak transcription | Aorta | Aorta |
2 | chr2:234777400-234778600 | Weak transcription | HSMM | muscle |