Variant report

Variant	rs16992628
Chromosome Location	chr21:17389546-17389547
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16990117	1.00[EUR][1000 genomes]
rs16990578	1.00[EUR][1000 genomes]
rs16990828	1.00[EUR][1000 genomes]
rs16992521	1.00[EUR][1000 genomes]
rs16992557	1.00[EUR][1000 genomes]
rs366082	1.00[EUR][1000 genomes]
rs367091	1.00[EUR][1000 genomes]
rs392028	1.00[EUR][1000 genomes]
rs56141957	1.00[EUR][1000 genomes]
rs58289432	1.00[EUR][1000 genomes]
rs58297914	1.00[EUR][1000 genomes]
rs59169113	1.00[EUR][1000 genomes]
rs73892584	1.00[EUR][1000 genomes]
rs73892585	1.00[EUR][1000 genomes]
rs73892591	1.00[EUR][1000 genomes]
rs73892592	1.00[EUR][1000 genomes]
rs73892593	1.00[EUR][1000 genomes]
rs73892594	1.00[EUR][1000 genomes]
rs73892598	1.00[EUR][1000 genomes]
rs73892601	1.00[EUR][1000 genomes]
rs73894705	1.00[EUR][1000 genomes]
rs73894706	1.00[EUR][1000 genomes]
rs73894707	1.00[EUR][1000 genomes]
rs73894709	1.00[EUR][1000 genomes]
rs73894710	1.00[EUR][1000 genomes]
rs764003	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064664	chr21:17336936-17405756	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv913414	chr21:17383785-17459507	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17389000-17390000	Active TSS	NHDF-Ad	bronchial
2	chr21:17389200-17390000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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